Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_13890 and PS417_13895 overlap by 7 nucleotidesPS417_13895 and PS417_13900 overlap by 4 nucleotidesPS417_13900 and PS417_13905 are separated by 15 nucleotidesPS417_13905 and PS417_13910 are separated by 240 nucleotides PS417_13890: PS417_13890 - histidine kinase, at 3,051,751 to 3,052,944 _13890 PS417_13895: PS417_13895 - chemotaxis protein CheB, at 3,052,938 to 3,053,543 _13895 PS417_13900: PS417_13900 - chemotaxis protein CheR, at 3,053,540 to 3,054,355 _13900 PS417_13905: PS417_13905 - chemotaxis protein CheY, at 3,054,371 to 3,057,874 _13905 PS417_13910: PS417_13910 - response regulator, at 3,058,115 to 3,058,471 _13910
Group Condition PS417_13890 PS417_13895 PS417_13900 PS417_13905 PS417_13910
solid stress Fraxetin 3 mM; solid stress N.D. -1.4 -0.8 -0.4 N.D.
liquid stress 80% Methanol 3 mM; liquid stress N.D. -1.4 -0.5 -0.3 N.D.
solid stress Fraxetin 2 mM; solid stress N.D. -1.2 -0.7 -0.2 N.D.
carbon source 2'-Deoxyinosine 5 mM (C) N.D. -0.6 -0.6 -0.8 N.D.
liquid stress 80% Methanol 3 mM; liquid stress N.D. -0.8 -0.5 -0.6 N.D.
solid stress Fraxetin 3 mM; solid stress N.D. -0.7 -0.8 -0.5 N.D.
carbon source 2'-Deoxyinosine 5 mM (C) N.D. -0.4 -0.6 -0.8 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -1.3 -0.5 -0.0 N.D.
stress LB_noSalt with Chloride 1100 mM N.D. -0.8 -0.1 -0.8 N.D.
liquid stress 80% Methanol 3 mM; liquid stress N.D. -0.6 -0.7 -0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.7 -0.6 -0.3 N.D.
stress methylglyoxal 0.032 vol% N.D. -1.0 -0.8 +0.2 N.D.
soil soil sample 8; outgrowth in LB N.D. -0.6 -0.6 -0.3 N.D.
solid stress Fraxetin 3 mM; solid stress N.D. -0.3 -0.9 -0.3 N.D.
liquid stress 80% Methanol 2 mM; liquid stress N.D. -0.8 -0.4 -0.3 N.D.
stress LB_noSalt with Chloride 1100 mM N.D. -0.5 -0.3 -0.7 N.D.
nophagecontrol Only library N.D. -1.3 -0.4 +0.3 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB N.D. -1.1 +0.2 -0.3 N.D.
phage P. simiae Grant Run MOI 10 N.D. -1.3 +0.0 +0.3 N.D.
agar plate interaction control Taped volatile agar plate with no fungus N.D. -1.3 +0.2 +0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. -1.6 +0.4 +0.2 N.D.
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.2 -1.0 +0.3 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.7 -0.6 +0.2 N.D.
motility outer cut, LB soft agar motility assay N.D. +0.8 -0.2 +0.6 N.D.
seeds Growth on radish seeds for 72 hours N.D. +1.1 -0.0 +0.4 N.D.
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. +0.6 +0.3 +0.6 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +1.0 +0.5 +0.5 N.D.
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. +1.4 +0.3 +0.4 N.D.
carbon source L-Valine (C) N.D. +1.4 +0.7 +0.2 N.D.
root root sample 6; outgrowth in LB N.D. +1.8 +0.6 +1.5 N.D.
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