Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_13875	PS417_13880	PS417_13885	PS417_13890	PS417_13895
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.0	-0.0	-2.4	N.D.	-1.6
solid stress	Fraxetin 3 mM; solid stress	+0.2	+0.0	-3.5	N.D.	-0.3
solid stress	Fraxetin 3 mM; solid stress	+0.2	-0.0	-1.7	N.D.	-1.4
stress	methylglyoxal 0.032 vol%	+0.1	-0.1	-1.7	N.D.	-1.0
solid stress	Fraxetin 3 mM; solid stress	+0.1	+0.0	-1.9	N.D.	-0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.0	-0.1	-1.4	N.D.	-0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	-0.2	-0.7	N.D.	-1.3
phage	JP1 MOI 10	+0.2	+0.3	-0.9	N.D.	-1.4
solid stress	Fraxetin 2 mM; solid stress	+0.1	+0.3	-0.8	N.D.	-1.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	+0.1	-1.5	N.D.	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	+0.2	-0.9	N.D.	-0.7
stress	Choline chloride 300 mM	+0.1	+0.1	-0.5	N.D.	-1.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB	+0.1	+0.2	-0.4	N.D.	-1.1
soil	soil sample 5; outgrowth in LB	-0.2	-0.3	+0.4	N.D.	-1.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.3	-1.3	N.D.	+0.1
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	+0.1	+0.1	-1.5	N.D.	+0.2
phage	P. simiae ORA MOI 0.1	-0.0	+0.3	-1.4	N.D.	+0.2
phage	JP1 MOI 1	+0.2	+0.4	-0.6	N.D.	-0.9
liquid stress	80% Methanol 3 mM; liquid stress	+0.1	+0.3	+0.5	N.D.	-1.4
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.0	-0.5	-1.5	N.D.	+1.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6	+0.0	-1.0	N.D.	+1.0
carbon source	2'-Deoxyinosine 5 mM (C)	+0.4	+0.3	+0.6	N.D.	-0.6
agar plate interaction control	Taped volatile agar plate with no fungus	-0.3	+0.3	+1.0	N.D.	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	+0.2	+0.6	N.D.	+0.9
stress	Gentamicin 0.008 mg/ml	+0.1	+0.2	+0.9	N.D.	+0.6
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.1	+0.1	+1.1	N.D.	+0.7
root	root sample 6; outgrowth in LB	+0.1	-0.4	+0.5	N.D.	+1.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.2	+0.1	+2.3	N.D.	-0.2
carbon source	L-Valine (C)	+0.1	-0.2	+1.2	N.D.	+1.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+0.6	+2.0	N.D.	+0.5