Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_13870	PS417_13875	PS417_13880	PS417_13885	PS417_13890
solid stress	Fraxetin 3 mM; solid stress	-5.2	+0.1	+0.0	-1.9	N.D.
solid stress	Fraxetin 3 mM; solid stress	-4.8	+0.2	-0.0	-1.7	N.D.
solid stress	Fraxetin 3 mM; solid stress	-1.8	+0.2	+0.0	-3.5	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.8	+0.0	+0.1	-1.5	N.D.
solid stress	Fraxetin 2 mM; solid stress	-2.6	+0.1	+0.3	-0.8	N.D.
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-1.7	+0.1	+0.1	-1.5	N.D.
solid stress	Fraxetin 3 mM; solid stress	-1.9	+0.0	-0.0	-1.1	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-3.4	+0.3	+0.2	+0.2	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.3	+0.0	-0.0	-2.4	N.D.
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.6	-0.0	-0.5	-1.5	N.D.
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.6	+0.0	-0.3	-0.6	N.D.
rhizosphere	rhizosphere sample 1; outgrowth in LB	-1.4	-0.0	-0.5	-0.3	N.D.
solid stress	Fraxetin 2 mM; solid stress	-1.3	-0.0	+0.3	-1.2	N.D.
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x	-0.7	-0.1	-0.3	-1.2	N.D.
solid stress	Fraxetin 2 mM; solid stress	-1.5	-0.1	-0.2	-0.4	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.3	+0.0	-0.2	-0.7	N.D.
phage	P. simiae OR1 MOI 0.1	-1.0	+0.1	+0.1	-1.3	N.D.
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.1	-0.3	+0.2	-0.9	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.2	+0.1	-0.1	+0.4	N.D.
phage	P. simiae ORA MOI 0.1	-0.4	-0.0	+0.3	-1.4	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.2	+0.3	-1.3	N.D.
phage	JP1 MOI 1	-1.4	+0.1	+0.2	-0.3	N.D.
stress	methylglyoxal 0.032 vol%	+0.3	+0.1	-0.1	-1.7	N.D.
root	root sample 6; outgrowth in LB	-1.3	+0.1	-0.4	+0.5	N.D.
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-1.0	-0.2	+0.3	+0.7	N.D.
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-1.4	+0.0	-0.0	+1.5	N.D.
stress	Gentamicin 0.008 mg/ml	-1.0	+0.1	+0.2	+0.9	N.D.
carbon source	L-Valine (C)	+0.5	+0.1	-0.2	+1.2	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.5	-0.2	+0.1	+2.3	N.D.
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+0.2	+0.6	+2.0	N.D.