Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_13865	PS417_13870	PS417_13875	PS417_13880	PS417_13885
solid stress	Fraxetin 3 mM; solid stress	-0.0	-5.2	+0.1	+0.0	-1.9
solid stress	Fraxetin 3 mM; solid stress	+0.3	-4.8	+0.2	-0.0	-1.7
solid stress	Fraxetin 3 mM; solid stress	-0.4	-1.8	+0.2	+0.0	-3.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-2.8	+0.0	+0.1	-1.5
solid stress	Fraxetin 3 mM; solid stress	-0.3	-1.9	+0.0	-0.0	-1.1
solid stress	Fraxetin 2 mM; solid stress	-0.1	-2.6	+0.1	+0.3	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-3.4	+0.3	+0.2	+0.2
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	+0.2	-1.7	+0.1	+0.1	-1.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.1	-0.3	+0.0	-0.0	-2.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	-2.2	+0.1	-0.1	+0.4
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.0	-0.6	-0.0	-0.5	-1.5
phage	P. simiae OR1 MOI 0.1	-0.3	-1.0	+0.1	+0.1	-1.3
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x	-0.2	-0.7	-0.1	-0.3	-1.2
solid stress	Fraxetin 2 mM; solid stress	-0.1	-1.5	-0.1	-0.2	-0.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	-1.6	+0.0	-0.3	-0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	-1.3	+0.0	-0.2	-0.7
solid stress	Fraxetin 2 mM; solid stress	+0.2	-1.3	-0.0	+0.3	-1.2
phage	P. simiae ORA MOI 0.1	-0.3	-0.4	-0.0	+0.3	-1.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.4	-1.1	-0.3	+0.2	-0.9
rhizosphere	rhizosphere sample 1; outgrowth in LB	+0.6	-1.4	-0.0	-0.5	-0.3
phage	P. simiae OR Antrim MOI 1	-0.8	-1.2	+0.1	+0.4	-0.2
stress	methylglyoxal 0.032 vol%	-0.1	+0.3	+0.1	-0.1	-1.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	-0.3	-0.0	-0.1	-1.4
root	root sample 6; outgrowth in LB	+0.4	-1.3	+0.1	-0.4	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	-0.3	+0.6	+0.0	-1.0
stress	Gentamicin 0.008 mg/ml	+0.2	-1.0	+0.1	+0.2	+0.9
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.6	-1.4	+0.0	-0.0	+1.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.1	-0.5	-0.2	+0.1	+2.3
carbon source	L-Valine (C)	+0.2	+0.5	+0.1	-0.2	+1.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	+0.2	+0.2	+0.6	+2.0