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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF270 and GFF271 are separated by 70 nucleotides
GFF271 and GFF272 overlap by 4 nucleotides
GFF272 and GFF273 are separated by 108 nucleotides
GFF273 and GFF274 are separated by 154 nucleotides
GFF270 - 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) (EC 4.2.1.117), at 304,528 to 307,146
GFF270
GFF271 - 2-methylcitrate synthase (EC 2.3.3.5), at 307,217 to 308,380
GFF271
GFF272 - thioesterase superfamily protein, at 308,377 to 308,817
GFF272
GFF273 - Transcriptional regulator, Xre family, at 308,926 to 310,347
GFF273
GFF274 - Probable RNA methyltransferase PA1839, at 310,502 to 311,548
GFF274
Group
Condition
GFF270
GFF271
GFF272
GFF273
GFF274
complex community
Community=Locust bean gum; Passage=4
-4.6
-3.8
-4.4
-3.9
-0.8
complex community
Community=Kojac gum; Passage=4
-5.0
-4.3
-4.5
-4.7
+1.2
complex community
Community=Locust bean gum; Passage=4
-4.7
-3.8
-4.4
-3.6
+0.7
complex community
Community=Locust bean gum; Passage=4
-5.1
-3.1
-4.5
-3.9
+1.2
complex community
Community=Locust bean gum; Passage=4
-4.4
-3.4
-4.4
-3.6
+0.6
complex community
Community=arabino-guar; Passage=4
-4.4
-3.2
-4.6
-2.0
-0.2
complex community
Community=guar; Passage=4
-3.9
-2.6
-4.4
-2.2
+0.5
complex community
Community=arabino-guar; Passage=4
-4.0
-1.7
-4.6
-2.0
-0.2
complex community
Community=guar; Passage=4
-4.0
-1.8
-4.3
-1.4
+0.8
complex community
Community=guar; Passage=4
-3.9
-2.8
-2.2
-2.1
+0.7
complex community
Community=arabino-guar; Passage=4
-3.8
-1.7
-2.6
-1.5
+0.3
complex community
Community=arabino-guar; Passage=4
-4.0
-2.3
-1.2
-1.4
-0.5
complex community
Community=guar; Passage=4
-3.6
-2.2
-1.5
-1.7
+0.7
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-1.5
-1.2
-1.7
-1.5
+0.4
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-1.7
-1.1
-0.7
-1.3
-0.3
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-1.9
-1.3
-0.3
-1.3
+0.2
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-1.9
-1.0
-0.5
-1.3
+0.1
vitamin
M9 with Supernatant from Cyptococcus
-1.1
-0.3
-1.3
-1.3
-0.5
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-1.6
-0.0
-1.1
-1.2
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-1.4
-0.4
-0.7
-1.1
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-1.5
-0.5
-0.5
-1.0
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-1.4
-0.3
-0.8
-1.1
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-1.5
-0.7
-0.3
-1.0
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-1.3
-0.5
-0.5
-1.2
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-1.3
+0.2
+0.0
-1.7
-0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-1.2
-0.2
-0.9
-0.9
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-1.5
-0.2
-0.2
-1.3
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-1.3
-0.2
-0.1
-1.5
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-1.2
+0.1
-1.1
-1.0
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL
-1.0
-0.3
+0.6
-1.0
-0.6
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