Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_13850	PS417_13855	PS417_13860	PS417_13865	PS417_13870
carbon source	L-Isoleucine (C)	-5.7	-4.5	N.D.	+0.4	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.7	-4.0	N.D.	-0.2	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.8	-2.2	N.D.	-0.3	-0.5
solid stress	Fraxetin 3 mM; solid stress	+0.3	+0.2	N.D.	-0.0	-5.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-1.5	N.D.	-0.7	-2.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.2	N.D.	-0.2	-3.4
solid stress	Fraxetin 3 mM; solid stress	+0.3	+0.7	N.D.	+0.3	-4.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-0.4	N.D.	-0.5	-2.8
phage	JP1 MOI 1	+0.3	-2.2	N.D.	+0.1	-1.4
exudates	RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x	-0.3	-1.3	N.D.	-0.5	-1.1
supernatant control	Vogels_fungal_media 0.1X	-0.4	-2.5	N.D.	-0.4	+0.2
phage	JP1 MOI 1	+0.3	-2.9	N.D.	-0.2	-0.3
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-0.3	-1.1	N.D.	+0.2	-1.7
solid stress	Fraxetin 3 mM; solid stress	-0.2	-0.1	N.D.	-0.4	-1.8
carbon source	L-Valine (C)	-0.4	-1.1	N.D.	-0.1	-0.9
carbon source	Carbon source D-Mannitol 5 mM	-0.4	-1.6	N.D.	+0.1	-0.6
seeds	Growth on radish seeds for 24 hours	+0.5	-2.1	N.D.	-0.2	-0.5
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.4	-2.5	N.D.	+0.2	+0.4
solid stress	Fraxetin 2 mM; solid stress	+0.0	+0.8	N.D.	-0.1	-2.6
carbon source	L-Valine (C)	-0.8	-1.8	N.D.	+0.2	+0.5
phage	P. simiae OR1 MOI 0.1	-0.8	+0.4	N.D.	-0.3	-1.0
solid stress	Fraxetin 3 mM; solid stress	+0.1	+0.4	N.D.	-0.3	-1.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.5	-1.3	N.D.	+0.9	-0.7
root	root sample 6; outgrowth in LB	+0.4	-1.0	N.D.	+0.4	-1.3
phage	P. simiae OR Antrim MOI 1	-0.0	+0.8	N.D.	-0.8	-1.2
solid stress	Fraxetin 2 mM; solid stress	+0.6	-0.8	N.D.	+0.2	-1.3
rhizosphere	rhizosphere sample 1; outgrowth in LB	+0.4	-0.3	N.D.	+0.6	-1.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+1.0	N.D.	-0.4	-1.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.2	+1.1	N.D.	+0.6	-1.4
carbon source	2'-Deoxyinosine 5 mM (C)	-0.0	+2.4	N.D.	+0.1	+0.2