Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_13840	PS417_13845	PS417_13850	PS417_13855	PS417_13860
carbon source	L-Isoleucine (C)	-0.4	N.D.	-5.7	-4.5	N.D.
carbon source	L-Valine (C)	-3.3	N.D.	-0.8	-1.8	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	N.D.	-1.7	-4.0	N.D.
carbon source	L-Valine (C)	-3.1	N.D.	-0.4	-1.1	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	N.D.	-1.8	-2.2	N.D.
supernatant control	Vogels_fungal_media 0.1X	-0.1	N.D.	-0.4	-2.5	N.D.
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.0	N.D.	-0.4	-2.5	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.5	N.D.	+0.1	-1.3	N.D.
phage	JP1 MOI 1	-0.1	N.D.	+0.3	-2.9	N.D.
phage	Wcs_1	-0.6	N.D.	-0.1	-1.7	N.D.
carbon source	Carbon source D-Mannitol 5 mM	-0.2	N.D.	-0.4	-1.6	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.1	N.D.	-0.5	-1.3	N.D.
phage	JP1 MOI 1	+0.5	N.D.	+0.3	-2.2	N.D.
motility_chemotaxis	Method=Plug_approach; Chemical=None; Chemical_conc=0mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.4	N.D.	+0.5	-1.5	N.D.
seeds	Growth on radish seeds for 24 hours	+0.4	N.D.	+0.5	-2.1	N.D.
exudates	RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x	+0.4	N.D.	-0.3	-1.3	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	N.D.	+0.3	-1.5	N.D.
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	+0.7	N.D.	-0.4	-1.2	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	N.D.	-0.1	-1.2	N.D.
soil	soil sample 3; outgrowth in LB	-0.6	N.D.	-0.8	+0.6	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	N.D.	+0.6	-0.9	N.D.
phage	P. simiae OR1 MOI 0.1	+0.7	N.D.	-0.8	+0.4	N.D.
phage	JP1 MOI 10	+0.3	N.D.	-0.9	+0.9	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	N.D.	-0.6	+1.1	N.D.
motility	inner cut, LB soft agar motility assay	+0.5	N.D.	-0.4	+0.9	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	N.D.	+0.2	+1.2	N.D.
seeds	Growth on radish seeds for 72 hours	+0.3	N.D.	+0.3	+1.3	N.D.
phage	JP1 MOI 0.1	+0.5	N.D.	+0.2	+1.3	N.D.
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	N.D.	+0.0	+1.4	N.D.
carbon source	2'-Deoxyinosine 5 mM (C)	+0.0	N.D.	-0.0	+2.4	N.D.