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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF2711 and GFF2712 are separated by 138 nucleotides
GFF2712 and GFF2713 are separated by 31 nucleotides
GFF2713 and GFF2714 are separated by 1907 nucleotides
GFF2714 and GFF2715 are separated by 124 nucleotides
GFF2711 - hypothetical protein, at 142,873 to 143,403
GFF2711
GFF2712 - no description, at 143,542 to 144,189
GFF2712
GFF2713 - Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily, at 144,221 to 145,741
GFF2713
GFF2714 - 2-ketogluconate utilization repressor PtxS, at 147,649 to 148,674
GFF2714
GFF2715 - 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43), at 148,799 to 149,782
GFF2715
Group
Condition
GFF2711
GFF2712
GFF2713
GFF2714
GFF2715
complex community
Community=arabino-guar; Passage=4
-2.1
-1.3
+0.0
-2.4
-1.2
complex community
Community=Locust bean gum; Passage=4
-0.8
+0.0
-0.2
-3.7
-2.2
complex community
Community=Kojac gum; Passage=4
-1.0
+0.6
-0.2
-4.5
-1.3
complex community
Community=Locust bean gum; Passage=4
-0.7
-0.4
-1.0
-3.4
+0.2
complex community
Community=arabino-guar; Passage=4
+0.1
+0.4
+0.2
-3.9
-1.6
complex community
Community=guar; Passage=4
-0.3
+0.1
-0.3
-2.9
-1.2
complex community
Community=guar; Passage=4
+0.2
-1.1
+0.2
-2.7
-0.9
complex community
Community=Locust bean gum; Passage=4
+0.3
+0.2
-0.5
-3.0
-1.5
complex community
Community=arabino-guar; Passage=4
-0.2
-0.6
-0.6
-2.5
+0.1
complex community
Community=guar; Passage=4
-0.7
-0.6
-0.5
-1.7
+0.1
complex community
Community=guar; Passage=4
-0.2
+0.1
-0.3
-1.8
-1.1
complex community
Community=arabino-guar; Passage=4
-0.7
+0.3
+0.3
-1.9
-1.0
complex community
Community=Locust bean gum; Passage=4
-0.3
+0.7
+0.4
-2.6
-0.9
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.3
-0.2
-0.1
-0.9
+0.0
no phage control
no phage control
-0.1
+0.1
-0.0
-0.4
-0.7
vitamin
M9 with Supernatant from Cyptococcus
-0.4
-0.0
+0.1
-0.1
-0.6
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.1
-0.3
+0.1
-0.3
-0.6
complex community
Community=Locust bean gum; Passage=1
-0.1
+0.1
+0.0
-0.1
-1.0
complex community
Community=Kojac gum; Passage=1
+0.0
+0.1
-0.1
-0.3
-0.7
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.3
-0.1
+0.0
-0.7
+0.2
vitamin
M9 with Supernatant from Cyptococcus
+0.1
-0.1
+0.1
-0.8
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.2
-0.6
+0.2
+0.1
-0.0
vitamin
M9 with Supernatant from Cyptococcus
+0.3
-0.2
+0.2
-0.7
+0.0
phage
phage_bap4
-0.2
-0.0
+0.2
+0.3
-0.6
vitamin
M9 with Supernatant from Cyptococcus
+0.3
-0.3
+0.2
-0.7
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.3
+0.1
-0.1
-0.3
+0.4
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.7
+0.1
+0.3
+0.4
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.2
+0.2
-0.2
-0.2
+0.4
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.0
-0.1
+0.0
+0.6
+0.7
phage
phage_bap4
-0.1
+0.3
+0.2
+0.1
+0.7
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