Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_13810 and PS417_13815 overlap by 4 nucleotidesPS417_13815 and PS417_13820 overlap by 4 nucleotidesPS417_13820 and PS417_13825 are separated by 3 nucleotidesPS417_13825 and PS417_13830 are separated by 183 nucleotides PS417_13810: PS417_13810 - 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase, at 3,034,562 to 3,034,909 _13810 PS417_13815: PS417_13815 - 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase, at 3,034,906 to 3,035,307 _13815 PS417_13820: PS417_13820 - UDP-glucose 6-dehydrogenase, at 3,035,304 to 3,036,683 _13820 PS417_13825: PS417_13825 - glycosyltransferase, at 3,036,687 to 3,038,309 _13825 PS417_13830: PS417_13830 - hypothetical protein, at 3,038,493 to 3,039,203 _13830
Group Condition PS417_13810 PS417_13815 PS417_13820 PS417_13825 PS417_13830
soil soil sample 2; outgrowth in LB N.D. N.D. -6.8 -0.3 +0.4
soil soil sample 7; outgrowth in LB N.D. N.D. -5.5 -0.9 +0.1
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. -5.5 -0.0 -0.4
soil soil sample 4; outgrowth in LB N.D. N.D. -5.7 -0.4 +0.2
stress Polymyxin B sulfate 0.006 mg/ml N.D. N.D. -6.3 +0.7 -0.0
stress Aluminum chloride 4 mM N.D. N.D. -4.4 -1.0 -0.2
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. -5.8 -0.1 +0.6
soil soil sample 6; outgrowth in LB N.D. N.D. -4.3 -0.4 -0.2
stress R2A with Polymyxin B sulfate 0.002 mg/ml N.D. N.D. -5.0 +0.1 +0.0
root root sample 6; outgrowth in LB N.D. N.D. -4.5 -1.1 +0.8
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. N.D. -4.4 -0.8 +0.6
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. -5.0 -0.1 +0.5
soil soil sample 3; outgrowth in LB N.D. N.D. -3.9 -0.2 -0.2
stress Benzalkonium Chloride 0.012 mg/ml N.D. N.D. -3.8 -0.3 -0.2
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. -4.6 +0.2 +0.1
stress Doxycycline hyclate 0.001 mg/ml N.D. N.D. -2.7 -0.8 -0.8
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -1.9 -0.6 -1.6
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. -4.0 -0.1 +0.0
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -2.0 -0.9 -1.0
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -2.3 -1.0 -0.5
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X N.D. N.D. -3.3 -0.2 -0.2
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. -3.1 -0.3 -0.2
supernatant control Vogels_fungal_media 0.1X N.D. N.D. -2.3 -1.2 +0.1
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. N.D. -2.8 -0.9 +0.3
soil soil sample 5; outgrowth in LB N.D. N.D. -2.9 -0.3 +0.1
stress R2A with Polymyxin B sulfate 0.002 mg/ml N.D. N.D. -3.0 +0.2 -0.1
stress Gentamicin 0.008 mg/ml N.D. N.D. -3.3 +0.7 -0.2
stress R2A with Polymyxin B sulfate 0.002 mg/ml N.D. N.D. -2.9 +0.1 +0.2
stress R2A with Polymyxin B sulfate 0.002 mg/ml N.D. N.D. -3.1 +0.1 +0.7
stress Neomycin 0.04 mg/ml N.D. N.D. -3.2 +3.0 +0.1
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PS417_13810
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PS417_13815
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