Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_13805 and PS417_13810 overlap by 4 nucleotidesPS417_13810 and PS417_13815 overlap by 4 nucleotidesPS417_13815 and PS417_13820 overlap by 4 nucleotidesPS417_13820 and PS417_13825 are separated by 3 nucleotides PS417_13805: PS417_13805 - 4-amino-4-deoxy-L-arabinose transferase, at 3,032,910 to 3,034,565 _13805 PS417_13810: PS417_13810 - 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase, at 3,034,562 to 3,034,909 _13810 PS417_13815: PS417_13815 - 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase, at 3,034,906 to 3,035,307 _13815 PS417_13820: PS417_13820 - UDP-glucose 6-dehydrogenase, at 3,035,304 to 3,036,683 _13820 PS417_13825: PS417_13825 - glycosyltransferase, at 3,036,687 to 3,038,309 _13825
Group Condition PS417_13805 PS417_13810 PS417_13815 PS417_13820 PS417_13825
stress Polymyxin B sulfate 0.006 mg/ml -5.6 N.D. N.D. -6.3 +0.7
stress R2A with Polymyxin B sulfate 0.003 mg/ml -5.0 N.D. N.D. -5.8 -0.1
stress R2A with Polymyxin B sulfate 0.003 mg/ml -5.3 N.D. N.D. -5.0 -0.1
soil soil sample 2; outgrowth in LB -3.3 N.D. N.D. -6.8 -0.3
stress R2A with Polymyxin B sulfate 0.003 mg/ml -4.5 N.D. N.D. -5.5 -0.0
stress R2A with Polymyxin B sulfate 0.003 mg/ml -5.1 N.D. N.D. -4.0 -0.1
stress Aluminum chloride 4 mM -3.8 N.D. N.D. -4.4 -1.0
soil soil sample 4; outgrowth in LB -2.7 N.D. N.D. -5.7 -0.4
soil soil sample 7; outgrowth in LB -2.2 N.D. N.D. -5.5 -0.9
root root sample 6; outgrowth in LB -2.9 N.D. N.D. -4.5 -1.1
rhizosphere rhizosphere sample 2; outgrowth in LB -3.2 N.D. N.D. -4.4 -0.8
stress R2A with Polymyxin B sulfate 0.002 mg/ml -3.4 N.D. N.D. -5.0 +0.1
stress R2A with Polymyxin B sulfate 0.003 mg/ml -3.4 N.D. N.D. -4.6 +0.2
soil soil sample 6; outgrowth in LB -3.0 N.D. N.D. -4.3 -0.4
stress Benzalkonium Chloride 0.012 mg/ml -3.1 N.D. N.D. -3.8 -0.3
rhizosphere rhizosphere sample 1; outgrowth in LB -3.0 N.D. N.D. -2.8 -0.9
stress R2A with Polymyxin B sulfate 0.003 mg/ml -3.1 N.D. N.D. -3.1 -0.3
soil soil sample 3; outgrowth in LB -2.2 N.D. N.D. -3.9 -0.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X -2.6 N.D. N.D. -3.3 -0.2
soil soil sample 5; outgrowth in LB -2.7 N.D. N.D. -2.9 -0.3
stress R2A with Polymyxin B sulfate 0.002 mg/ml -3.0 N.D. N.D. -3.0 +0.2
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.5 N.D. N.D. -2.3 -1.0
stress Doxycycline hyclate 0.001 mg/ml -2.1 N.D. N.D. -2.7 -0.8
stress Gentamicin 0.008 mg/ml -3.0 N.D. N.D. -3.3 +0.7
stress R2A with Polymyxin B sulfate 0.002 mg/ml -2.5 N.D. N.D. -3.1 +0.1
stress R2A with Polymyxin B sulfate 0.002 mg/ml -3.1 N.D. N.D. -2.4 +0.1
stress R2A with Polymyxin B sulfate 0.002 mg/ml -2.4 N.D. N.D. -2.9 +0.1
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.2 N.D. N.D. -2.0 -0.9
supernatant control Vogels_fungal_media 0.1X -1.6 N.D. N.D. -2.3 -1.2
stress Neomycin 0.04 mg/ml -3.1 N.D. N.D. -3.2 +3.0
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