Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_13780 and PS417_13785 are separated by 108 nucleotidesPS417_13785 and PS417_13790 are separated by 413 nucleotidesPS417_13790 and PS417_13795 overlap by 4 nucleotidesPS417_13795 and PS417_13800 overlap by 1 nucleotides PS417_13780: PS417_13780 - integrase, at 3,026,746 to 3,027,660 _13780 PS417_13785: PS417_13785 - hypothetical protein, at 3,027,769 to 3,028,593 _13785 PS417_13790: PS417_13790 - UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase, at 3,029,007 to 3,030,041 _13790 PS417_13795: PS417_13795 - UDP-4-amino-4-deoxy-L-arabinose formyltransferase, at 3,030,038 to 3,032,029 _13795 PS417_13800: PS417_13800 - 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase, at 3,032,029 to 3,032,913 _13800
Group Condition PS417_13780 PS417_13785 PS417_13790 PS417_13795 PS417_13800
stress Polymyxin B sulfate 0.006 mg/ml -2.9 -3.0 -4.5 -7.5 -4.8
soil soil sample 3; outgrowth in LB -0.2 -0.5 -4.8 -6.5 -6.5
soil soil sample 4; outgrowth in LB -0.1 -0.2 -4.4 -6.7 -6.7
soil soil sample 7; outgrowth in LB -0.4 -1.1 -3.4 -7.4 -4.8
soil soil sample 2; outgrowth in LB -0.3 -0.3 -2.7 -6.7 -6.9
stress R2A with Polymyxin B sulfate 0.003 mg/ml -1.3 -1.7 -3.0 -5.0 -4.5
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.7 -0.8 -3.4 -5.3 -5.4
soil soil sample 6; outgrowth in LB -0.5 -0.0 -3.8 -3.9 -6.9
stress Neomycin 0.04 mg/ml -2.3 -2.7 -2.9 -3.4 -3.5
rhizosphere rhizosphere sample 1; outgrowth in LB -0.3 -1.1 -3.9 -4.8 -4.1
stress R2A with Polymyxin B sulfate 0.003 mg/ml -1.0 +0.2 -3.8 -4.8 -4.2
stress Aluminum chloride 4 mM -0.6 -1.3 -3.5 -3.8 -3.9
stress Gentamicin 0.008 mg/ml -2.0 -1.0 -3.4 -3.1 -3.2
stress Benzalkonium Chloride 0.012 mg/ml -0.8 -0.8 -3.1 -3.4 -4.5
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.6 -0.2 -2.3 -3.6 -5.4
root root sample 6; outgrowth in LB +0.1 -0.3 -2.2 -4.3 -5.0
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.7 -1.1 -2.6 -3.9 -3.0
soil soil sample 5; outgrowth in LB -0.0 -0.9 -4.1 -3.7 -2.3
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.6 -0.6 -2.4 -4.9 -2.6
rhizosphere rhizosphere sample 2; outgrowth in LB +0.4 -0.2 -2.5 -4.6 -3.3
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.9 -1.1 -2.5 -2.8 -2.7
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X +0.2 -0.3 -2.1 -3.4 -4.3
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.9 -0.9 -2.2 -3.3 -2.5
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.1 -1.1 -2.0 -3.4 -3.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X -0.0 -0.6 -2.5 -2.7 -3.3
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.7 -1.1 -2.3 -2.9 -2.0
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.5 -1.0 -2.1 -2.9 -2.7
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X +0.1 -0.2 -2.3 -2.8 -3.6
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.1 -0.2 -2.9 -2.7 -2.6
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 -0.2 -1.8 -2.2 -4.1
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