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Fitness for 5 genes in
Pseudomonas simiae WCS417
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500 nt
PS417_13780 and PS417_13785 are separated by 108 nucleotides
PS417_13785 and PS417_13790 are separated by 413 nucleotides
PS417_13790 and PS417_13795 overlap by 4 nucleotides
PS417_13795 and PS417_13800 overlap by 1 nucleotides
PS417_13780: PS417_13780 - integrase, at 3,026,746 to 3,027,660
_13780
PS417_13785: PS417_13785 - hypothetical protein, at 3,027,769 to 3,028,593
_13785
PS417_13790: PS417_13790 - UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase, at 3,029,007 to 3,030,041
_13790
PS417_13795: PS417_13795 - UDP-4-amino-4-deoxy-L-arabinose formyltransferase, at 3,030,038 to 3,032,029
_13795
PS417_13800: PS417_13800 - 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase, at 3,032,029 to 3,032,913
_13800
Group
Condition
PS417
_13780
PS417
_13785
PS417
_13790
PS417
_13795
PS417
_13800
stress
Polymyxin B sulfate 0.006 mg/ml
-2.9
-3.0
-4.5
-7.5
-4.8
soil
soil sample 3; outgrowth in LB
-0.2
-0.5
-4.8
-6.5
-6.5
soil
soil sample 4; outgrowth in LB
-0.1
-0.2
-4.4
-6.7
-6.7
soil
soil sample 7; outgrowth in LB
-0.4
-1.1
-3.4
-7.4
-4.8
soil
soil sample 2; outgrowth in LB
-0.3
-0.3
-2.7
-6.7
-6.9
stress
R2A with Polymyxin B sulfate 0.003 mg/ml
-1.3
-1.7
-3.0
-5.0
-4.5
stress
R2A with Polymyxin B sulfate 0.003 mg/ml
-0.7
-0.8
-3.4
-5.3
-5.4
soil
soil sample 6; outgrowth in LB
-0.5
-0.0
-3.8
-3.9
-6.9
stress
Neomycin 0.04 mg/ml
-2.3
-2.7
-2.9
-3.4
-3.5
rhizosphere
rhizosphere sample 1; outgrowth in LB
-0.3
-1.1
-3.9
-4.8
-4.1
stress
R2A with Polymyxin B sulfate 0.003 mg/ml
-1.0
+0.2
-3.8
-4.8
-4.2
stress
Aluminum chloride 4 mM
-0.6
-1.3
-3.5
-3.8
-3.9
stress
Gentamicin 0.008 mg/ml
-2.0
-1.0
-3.4
-3.1
-3.2
stress
Benzalkonium Chloride 0.012 mg/ml
-0.8
-0.8
-3.1
-3.4
-4.5
stress
R2A with Polymyxin B sulfate 0.003 mg/ml
-0.6
-0.2
-2.3
-3.6
-5.4
root
root sample 6; outgrowth in LB
+0.1
-0.3
-2.2
-4.3
-5.0
stress
R2A with Polymyxin B sulfate 0.002 mg/ml
-0.7
-1.1
-2.6
-3.9
-3.0
soil
soil sample 5; outgrowth in LB
-0.0
-0.9
-4.1
-3.7
-2.3
stress
R2A with Polymyxin B sulfate 0.003 mg/ml
-0.6
-0.6
-2.4
-4.9
-2.6
rhizosphere
rhizosphere sample 2; outgrowth in LB
+0.4
-0.2
-2.5
-4.6
-3.3
stress
R2A with Polymyxin B sulfate 0.002 mg/ml
-0.9
-1.1
-2.5
-2.8
-2.7
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
+0.2
-0.3
-2.1
-3.4
-4.3
stress
R2A with Polymyxin B sulfate 0.002 mg/ml
-0.9
-0.9
-2.2
-3.3
-2.5
stress
R2A with Polymyxin B sulfate 0.003 mg/ml
-0.1
-1.1
-2.0
-3.4
-3.3
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
-0.0
-0.6
-2.5
-2.7
-3.3
stress
R2A with Polymyxin B sulfate 0.002 mg/ml
-0.7
-1.1
-2.3
-2.9
-2.0
stress
R2A with Polymyxin B sulfate 0.002 mg/ml
-0.5
-1.0
-2.1
-2.9
-2.7
supernatant
Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X
+0.1
-0.2
-2.3
-2.8
-3.6
carbon source
Deoxyribonucleic from herring sperm 10 mg/mL (C)
-0.1
-0.2
-2.9
-2.7
-2.6
in planta
Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days
+0.5
-0.2
-1.8
-2.2
-4.1
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