Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_00130	PS417_00135	PS417_00140	PS417_00145	PS417_00150
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.8	-0.0	-0.1	-0.2	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.3	-0.2	-0.3	-0.5
phage	JP1 MOI 1	-0.8	-0.3	+0.1	-0.3	-0.1
carbon source	D-Galactose (C)	-0.1	+0.0	-0.1	-0.4	-0.8
soil	soil sample 8; outgrowth in LB	-0.4	-0.1	-0.2	-0.0	-0.5
soil	soil sample 7; outgrowth in LB	-0.1	-0.5	-0.1	-0.3	-0.3
motility	inner cut, LB soft agar motility assay	-0.4	-0.5	+0.1	-0.3	-0.3
carbon source	D-Galactose (C)	-0.4	+0.0	+0.1	-0.2	-0.8
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.2	-0.1	+0.1	-0.0	-0.9
soil	soil sample 4; outgrowth in LB	-0.6	-0.3	-0.3	+0.0	+0.2
phage	JP1 MOI 10	-0.2	-0.5	+0.1	+0.2	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	+0.4	-0.4	-0.2	-0.1
carbon source	L-Valine (C)	-0.4	-0.2	-0.0	-0.4	+0.4
supernatant control	Vogels_fungal_media 0.1X	-0.4	+0.2	+0.2	+0.0	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	-0.4	+0.1	+0.0	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.6	-0.4	-0.3	-0.6
agar plate interaction control	Taped volatile agar plate with no fungus	+0.6	-0.2	-0.2	+0.1	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.7	-0.3	-0.0	+0.1	-0.5
phage	P. simiae Grant Run MOI 0.1	-0.5	-0.2	+0.3	+0.6	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	-0.2	-0.4	+0.2	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-0.1	-0.2	-0.1	+0.9
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	+0.1	+0.2	-0.5	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7	-0.2	-0.2	+0.4	+0.0
stress	methylglyoxal 0.032 vol%	+0.9	-0.2	-0.3	-0.1	+0.6
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.3	+0.1	+0.1	+0.1	+0.9
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.9	-0.1	-0.1	+0.5	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.9	+0.4	-0.1	-0.5	+0.4
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.4	+0.0	+0.3	+0.6	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+1.6	+0.1	-0.3	-0.0	+0.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.5	+0.4	-0.2	-0.0	+0.8