Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_13735	PS417_13740	PS417_13745	PS417_13750	PS417_13755
soil	soil sample 4; outgrowth in LB	-1.9	-0.6	-0.0	-0.0	-1.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-1.3	-0.4	+0.1	+0.0	-2.2
seeds	Growth on radish seeds for 72 hours	-0.9	+0.0	+0.1	-0.3	-1.2
solid stress	Fraxetin 3 mM; solid stress	-0.6	-0.7	+0.2	-0.0	-1.2
seeds	Growth on radish seeds for 72 hours	-0.8	+0.1	-0.1	-1.0	-0.5
phage	P. simiae Grant Run MOI 10	-0.7	+0.1	+0.2	-0.6	-1.2
soil	soil sample 7; outgrowth in LB	-2.0	-0.1	-0.0	+0.2	-0.2
soil	soil sample 6; outgrowth in LB	-1.0	-0.4	+0.1	+0.1	-0.9
phage	P. simiae ORA MOI 1	-1.1	+0.5	-0.2	-0.3	-0.9
phage	P. simiae Grant Run MOI 0.1	-1.9	+0.4	+0.1	-0.1	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.9	+0.5	-0.0	+0.3	-0.1
soil	soil sample 3; outgrowth in LB	+0.3	+0.6	+0.1	-0.5	-1.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-0.5	+0.3	+0.2	-1.1
supernatant control	Vogels_fungal_media 0.1X	-1.3	+0.3	+0.1	-0.3	+0.6
stress	1-ethyl-3-methylimidazolium chloride 200 mM	-1.4	-0.1	+0.1	+0.2	+0.8
soil	soil sample 5; outgrowth in LB	+0.9	-0.4	+0.2	-0.2	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	-1.0	-0.0	-0.2	+1.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	-0.5	+0.1	-0.0	+1.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+1.1	+0.2	-0.5	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+1.3	-0.5	+0.3	+0.2	-0.8
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	+1.2	-0.4	+0.1	-0.5	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.7	+0.4	-0.1	+0.3	+0.9
stress	Phosphomycin 0.002 mg/ml	+1.1	+0.2	+0.2	+0.3	-0.8
stress	Gentamicin 0.008 mg/ml	+1.3	-0.6	-0.1	-0.1	+0.5
carbon source	2'-Deoxyinosine 5 mM (C)	+1.7	+0.1	+0.2	-0.1	-0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.9	+0.0	-0.0	+0.1	-0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7	-0.2	+0.4	+0.2	+2.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4	+0.6	+0.2	+0.0	+1.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	+0.9	+0.8	+0.0	+0.5	-0.1
supernatant control	Vogels_fungal_media; pH 5.5	+0.7	+0.6	+0.2	+0.2	+0.5