Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_13725	PS417_13730	PS417_13735	PS417_13740	PS417_13745
root	root sample 6; outgrowth in LB	-0.7	-1.6	-1.1	-0.2	+0.1
soil	soil sample 7; outgrowth in LB	-0.4	-0.3	-2.0	-0.1	-0.0
phage	JP1 MOI 1	-0.4	-1.7	-0.3	-0.4	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.3	-0.8	-1.1	-0.0	-0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.1	-1.4	-0.5	-0.3	+0.0
soil	soil sample 4; outgrowth in LB	+0.4	+0.1	-1.9	-0.6	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	+0.2	-0.7	-0.5	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	+0.2	-1.9	+0.5	-0.0
phage	P. simiae ORA MOI 10	-1.0	+0.1	-1.0	+0.1	+0.2
phage	P. simiae Grant Run MOI 0.1	+0.0	-0.2	-1.9	+0.4	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.5	-1.0	-0.9	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.9	-0.2	-1.9	-0.1	-0.1
supernatant	LB 0.5x with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x	-0.4	+0.2	-1.4	+0.2	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-1.0	+0.3	-0.5	+0.3
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.7	+0.7	-1.2	+0.2	+0.1
carbon source	D-Xylose (C)	+0.7	-1.2	-0.3	-0.0	+0.0
liquid stress	80% Methanol 2 mM; liquid stress	+0.4	-1.4	+0.9	-0.5	-0.1
soil	soil sample 3; outgrowth in LB	+0.1	-1.2	+0.3	+0.6	+0.1
carbon source	Fumarate (C)	+0.7	-1.0	+0.5	-0.1	+0.0
soil	soil sample 5; outgrowth in LB	+0.2	-0.8	+0.9	-0.4	+0.2
phage	P. simiae ORA MOI 0.1	-0.4	+0.6	-0.7	+0.5	+0.3
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-0.2	-0.3	+1.2	-0.4	+0.1
stress	Gentamicin 0.008 mg/ml	-0.8	+0.7	+1.3	-0.6	-0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	-1.0	+0.9	+0.3	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+1.3	-0.1	-0.6	+0.2
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	+0.0	-0.3	+1.6	-0.2	+0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	-0.8	+1.9	+0.0	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	+0.9	+1.0	-0.4	-0.1
ecofab	LB in EcoFAB_3.5mL	+0.3	+0.2	+1.7	+0.1	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.9	-0.1	+1.1	+0.2