Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_13675	PS417_13680	PS417_13685	PS417_13690	PS417_13695
carbon source	L-Valine (C)	-0.2	-1.4	-0.3	+0.0	-0.5
phage	JP1 MOI 10	-0.8	-0.4	-0.3	+0.1	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7	-0.3	-0.6	+0.1	+0.4
motility	inner cut, LB soft agar motility assay	-0.6	-0.5	-0.1	-0.1	+0.2
root	root sample 6; outgrowth in LB	+0.5	-0.3	+0.8	-2.0	-0.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.7	+0.5	-0.5	-0.2	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	+0.2	-0.8	-0.5	-0.1
phage	P. simiae OR Antrim MOI 10	+0.5	-0.3	-0.5	-0.3	-0.1
supernatant	RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	-0.5	-0.1	+0.5	-0.4	-0.1
agar plate interaction control	Taped volatile agar plate with no fungus	-0.6	+0.3	-0.6	+0.3	+0.0
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-1.1	-0.1	+0.4	+0.1	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	-0.0	-0.4	-0.3	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.7	-0.3	-0.6	+0.0	-0.1
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.1	+0.4	+0.3	-1.2	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-0.5	-0.1	+0.5	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	-0.2	-0.7	-0.0	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.5	-0.4	+0.9	+0.1	-0.0
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.2	-0.1	+0.4	-0.5	+0.2
soil	soil sample 8; outgrowth in LB	-0.1	+0.4	-0.5	+0.5	-0.1
exudates	RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x	-0.1	+0.3	+0.7	-0.4	-0.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6	+0.2	+0.1	+0.6	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	-0.1	-0.4	+0.5	+0.0
soil	soil sample 7; outgrowth in LB	-0.3	+0.4	+0.2	+0.4	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.7	-0.2	+0.2	+0.2
carbon source	2'-Deoxyinosine 5 mM (C)	-0.1	+0.3	-0.3	+0.6	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	+0.2	+0.6	-0.3	+0.1
stress	Neomycin 0.04 mg/ml	-0.2	+0.0	+1.3	+0.2	+0.1
stress	methylglyoxal 0.032 vol%	+0.5	+0.5	-0.1	+0.3	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.2	+0.2	+0.4	+0.5	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+2.6	-0.4	-0.1	+0.1	+0.2