Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_13660	PS417_13665	PS417_13670	PS417_13675	PS417_13680
soil	soil sample 5; outgrowth in LB	-1.1	-0.5	-0.0	-0.6	-0.3
phage	JP1 MOI 10	-1.0	+0.3	-0.5	-0.8	-0.4
soil	soil sample 6; outgrowth in LB	-1.1	-0.2	-0.5	-0.4	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	+0.4	-0.7	-0.7	-0.3
stress	Choline chloride 300 mM	-0.6	-0.3	-0.1	-0.5	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.7	-0.1	-0.6	-0.3	+0.0
motility	inner cut, LB soft agar motility assay	+0.2	-0.2	-0.3	-0.6	-0.5
solid stress	Fraxetin 3 mM; solid stress	-1.2	+0.1	+0.1	+0.1	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.4	-0.4	-0.3	-0.3	-0.6
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-1.0	+0.3	-0.2	+0.1	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	-0.2	-0.3	-0.8	+0.0
carbon source	L-Valine (C)	+0.5	+0.5	-0.1	-0.2	-1.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	+0.2	-0.5	+0.7	-0.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5	+0.0	+0.2	-0.7	+0.5
r2a control	R2A control	+0.3	-0.4	-0.5	+0.4	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	-0.1	-0.3	+0.5	+0.4
phage	P. simiae OR1 MOI 0.1	+1.1	-0.2	-0.7	-0.1	-0.3
nophagecontrol	Only library	-0.4	+0.6	-0.6	+0.6	-0.2
carbon source	Carbon source D-Mannitol 2.5 mM	-0.9	-0.1	+0.2	+0.4	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	+0.2	+0.6	+0.3	-0.5
stress	methylglyoxal 0.032 vol%	+0.3	-0.5	-0.3	+0.5	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.6	+0.2	-0.4	-0.5	-0.4
phage	P. simiae ORA MOI 0.1	+0.5	+0.2	-0.3	+0.5	-0.2
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.2	+0.6	+0.4	-0.4	+0.3
solid stress	80% Methanol 2 mM; solid stress	+0.1	+0.3	+0.3	+0.8	-0.3
phage	JP1 MOI 1	+0.6	+0.8	+0.1	-0.1	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.0	-0.4	-0.2	+0.3	+0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.5	-0.1	+0.3	+2.6	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+1.2	-0.0	+0.2	+0.3	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+3.0	-0.0	+0.3	-0.1	+0.0