Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 552 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_13655	PS417_13660	PS417_13665	PS417_13670	PS417_13675
phage	JP1 MOI 10	+0.3	-1.0	+0.3	-0.5	-0.8
soil	soil sample 6; outgrowth in LB	+0.6	-1.1	-0.2	-0.5	-0.4
soil	soil sample 5; outgrowth in LB	+0.7	-1.1	-0.5	-0.0	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	-0.5	-0.0	+0.4	-0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6	-0.5	+0.4	-0.7	-0.7
carbon source	Carbon source D-Mannitol 2.5 mM	-0.3	-0.9	-0.1	+0.2	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-0.6	+0.2	-0.5	+0.7
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.3	-1.0	+0.3	-0.2	+0.1
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	+0.7	+0.3	-0.3	-0.9	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6	+0.5	-0.2	-0.3	-0.8
stress	Paraquat dichloride 0.008 mg/ml	-0.3	+0.6	-0.4	+0.3	-0.3
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	+0.3	+0.6	-0.4	-0.5	-0.1
phage	P. simiae Grant Run MOI 10	-0.4	+0.6	+0.3	-0.4	-0.2
nophagecontrol	Only library	-0.1	-0.4	+0.6	-0.6	+0.6
phage	P. simiae OR1 MOI 0.1	+0.3	+1.1	-0.2	-0.7	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.5	+1.6	+0.2	-0.4	-0.5
stress	methylglyoxal 0.032 vol%	+0.3	+0.3	-0.5	-0.3	+0.5
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.3	+0.2	+0.6	+0.4	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.4	+0.8	-0.2	-0.3	-0.2
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	+0.6	-0.3	-0.1	+0.7	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.6	-0.6	-0.0	+0.7	+0.1
rhizosphere	rhizosphere sample 1; outgrowth in LB	+1.1	-0.8	+0.2	-0.0	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.0	-0.0	+0.3	-0.2	-0.3
phage	JP1 MOI 1	-0.5	+0.6	+0.8	+0.1	-0.1
solid stress	80% Methanol 2 mM; solid stress	-0.5	+0.1	+0.3	+0.3	+0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.2	-0.5	-0.2	+0.1	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.7	+1.0	-0.4	-0.2	+0.3
phage	P. simiae ORA MOI 0.1	+0.5	+0.5	+0.2	-0.3	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.1	-0.5	-0.1	+0.3	+2.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.5	+3.0	-0.0	+0.3	-0.1