Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_13650	PS417_13655	PS417_13660	PS417_13665	PS417_13670
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.5	-0.6	+0.2	-0.5
carbon source	Carbon source D-Mannitol 2.5 mM	-0.4	-0.3	-0.9	-0.1	+0.2
stress	methylglyoxal 0.032 vol%	-1.1	+0.3	+0.3	-0.5	-0.3
nophagecontrol	Only library	-0.6	-0.1	-0.4	+0.6	-0.6
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.4	+0.3	-1.0	+0.3	-0.2
soil	soil sample 5; outgrowth in LB	+0.2	+0.7	-1.1	-0.5	-0.0
phage	JP1 MOI 10	+0.3	+0.3	-1.0	+0.3	-0.5
soil	soil sample 6; outgrowth in LB	+0.7	+0.6	-1.1	-0.2	-0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	+0.6	-0.5	+0.4	-0.7
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.7	+0.0	+0.5	-0.6	+0.3
stress	Paraquat dichloride 0.008 mg/ml	-0.2	-0.3	+0.6	-0.4	+0.3
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	+0.3	+0.7	+0.3	-0.3	-0.9
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	+0.0	+0.3	+0.6	-0.4	-0.5
carbon source	L-Valine (C)	-0.9	+0.3	+0.5	+0.5	-0.1
stress	Gentamicin 0.008 mg/ml	-0.7	+0.5	-0.1	+0.0	+0.8
phage	P. simiae Grant Run MOI 10	+0.3	-0.4	+0.6	+0.3	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	+1.2	-0.5	-0.2	+0.1
phage	JP1 MOI 1	-0.1	-0.5	+0.6	+0.8	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	+0.6	-0.6	-0.0	+0.7
phage	P. simiae OR1 MOI 0.1	+0.5	+0.3	+1.1	-0.2	-0.7
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	+0.1	+0.6	-0.3	-0.1	+0.7
rhizosphere	rhizosphere sample 1; outgrowth in LB	+0.6	+1.1	-0.8	+0.2	-0.0
soil	soil sample 3; outgrowth in LB	+0.5	+0.7	+0.3	-0.2	-0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.9	+0.8	-0.1	-0.5	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.5	-0.5	+1.6	+0.2	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.0	+0.5	+0.2	+0.3	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	+0.7	+1.0	-0.4	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+1.2	+0.4	+0.8	-0.2	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.6	+0.5	+0.6	+0.4	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	-0.5	+3.0	-0.0	+0.3