Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_13625	PS417_13635	PS417_13640	PS417_13645	PS417_13650
motility	outer cut, LB soft agar motility assay	-0.3	-0.2	-0.7	-0.6	-0.4
root	root sample 6; outgrowth in LB	-0.5	+0.0	-0.8	-1.2	+0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	-0.2	-0.9	-1.2	-0.0
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.5	-0.3	-0.9	-0.7	-0.4
carbon source	D-Fructose (C)	+0.1	-0.9	-0.8	-0.7	+1.0
stress	methylglyoxal 0.032 vol%	+0.5	+0.1	-1.0	+0.2	-1.1
carbon source	D-Fructose (C)	+0.1	-0.6	-0.7	-1.1	+1.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.2	-0.1	-1.1	-0.7	+0.5
solid stress	Fraxetin 3 mM; solid stress	-0.3	-0.2	-0.7	+0.8	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-0.3	-0.6	+0.7	-0.2
seeds	Growth on radish seeds for 72 hours	-0.4	-0.2	-1.0	+0.2	+0.6
seeds	Growth on radish seeds for 24 hours	-0.3	+0.1	-1.4	+0.6	+0.3
stress	Gentamicin 0.008 mg/ml	+0.5	-0.3	+0.3	-0.4	-0.7
carbon source	2'-Deoxyinosine 5 mM (C)	+0.9	-0.0	-0.6	-0.5	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	-0.0	-1.4	-0.3	+0.6
seeds	Growth on radish seeds for 72 hours	-0.1	+0.4	-0.6	-0.6	+0.6
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	+0.3	-0.2	-0.7	+0.7
phage	P. simiae OR1 MOI 0.1	-1.0	+0.2	-0.4	+0.4	+0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.8	+0.0	-0.3	-1.0	+0.2
supernatant control	Vogels_fungal_media 0.1X	+0.2	-0.0	+0.6	-1.3	+0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.6	+0.6	-0.1	-1.1	-0.1
agar plate interaction control	Taped volatile agar plate with no fungus	-0.3	-0.5	+1.1	-0.6	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.9	-0.4	+0.1	+0.4	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.7	-0.5	+0.6	+0.4	+0.6
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.7	+0.4	-0.7	-0.2	+0.3
stress	Nalidixic 0.025 mg/ml	+0.4	+0.2	-0.3	+0.9	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.0	+0.1	+1.1	-0.7	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.3	+0.5	-0.2	-0.2	+1.2
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-0.4	-0.1	+0.8	+0.3	+0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.8	-0.0	-0.7	+1.9	+0.9