Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_13605	PS417_13610	PS417_13615	PS417_13620	PS417_13625
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.8	+0.5	N.D.	-2.6	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.9	+0.0	N.D.	-1.6	-0.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	-0.6	N.D.	-1.3	+0.1
liquid stress	80% Methanol 2 mM; liquid stress	+0.3	-0.2	N.D.	-2.0	-0.2
carbon source	Carbon source D-Mannitol 2.5 mM	-0.2	+0.0	N.D.	-1.8	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.3	+0.2	N.D.	-1.6	-0.2
phage	P. simiae OR1 MOI 0.1	-0.0	+0.6	N.D.	-0.7	-1.0
phage	P. simiae ORA MOI 0.1	-0.5	+0.3	N.D.	-1.5	+0.6
phage	JP1 MOI 10	+0.1	+0.6	N.D.	-1.9	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.4	N.D.	-1.6	+0.1
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.4	+0.2	N.D.	-1.1	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.5	+0.1	N.D.	-1.5	+0.2
carbon source	2'-Deoxyinosine 5 mM (C)	+0.3	-0.1	N.D.	-1.3	+0.5
nophagecontrol	Only library	+0.5	+0.5	N.D.	-1.8	+0.3
stress	methylglyoxal 0.032 vol%	+0.5	-0.2	N.D.	-1.1	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-0.1	N.D.	+1.2	-0.5
seeds	Growth on radish seeds for 72 hours	-0.1	-0.7	N.D.	+2.1	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.4	N.D.	+1.0	+0.7
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.6	+0.5	N.D.	+0.9	+0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+1.0	+0.4	N.D.	+1.0	+0.1
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.6	+0.5	N.D.	+1.0	+0.5
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.7	+0.4	N.D.	+1.0	+0.7
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+1.0	+0.3	N.D.	+1.2	+0.3
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.6	+0.7	N.D.	+1.2	+0.4
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+1.0	+0.5	N.D.	+1.4	+0.4
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+1.2	+0.7	N.D.	+1.1	+0.6
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+1.4	+0.6	N.D.	+1.0	+0.7
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+1.2	+0.9	N.D.	+1.0	+0.5
stress	Gentamicin 0.008 mg/ml	+0.8	+1.0	N.D.	+1.6	+0.5
stress	Neomycin 0.04 mg/ml	+1.5	+0.8	N.D.	+2.3	+0.6