Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_13585	PS417_13590	PS417_13595	PS417_13600	PS417_13605
phage	P. simiae OR Antrim MOI 10	-0.1	-0.4	-0.3	-0.6	-0.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.0	-1.1	+0.1	-0.3	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	-0.1	-0.1	-0.4	-1.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-1.2	+0.1	-0.3	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.4	-0.5	-0.4	-0.0	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.2	-0.3	+0.3	-0.6	-0.5
carbon source	2'-Deoxyinosine 5 mM (C)	-0.4	-0.9	+0.1	-0.2	+0.3
phage	P. simiae ORA MOI 0.1	+0.1	-0.5	+0.3	-0.4	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.4	+0.3	+0.5	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.9	+0.6	-0.3	-0.2
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.7	-0.2	+0.2	-0.4	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.5	+0.4	-0.3	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.7	-0.4	-0.5	-0.1
stress	methylglyoxal 0.032 vol%	-0.5	-0.7	+0.3	+0.2	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.5	+0.4	-0.3	-0.6
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.0	-1.2	+0.1	+0.5	+0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	-0.3	+0.3	+0.7	-0.4
supernatant	Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x	-0.2	-0.4	+0.4	-0.3	+0.6
solid stress	Fraxetin 3 mM; solid stress	+0.1	+0.2	+0.3	+0.5	-0.8
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.1	-0.7	+0.4	-0.4	+1.0
nophagecontrol	Only library	-0.0	+0.6	-0.2	-0.4	+0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	-0.2	+0.3	-0.7	+1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	-0.3	-0.3	+0.9	+0.0
seeds	Growth on radish seeds for 24 hours	-0.1	-0.2	+0.4	+0.7	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	+0.5	+0.7	-0.1	-0.2
stress	Neomycin 0.04 mg/ml	-0.1	-0.6	+0.2	+0.2	+1.5
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.3	+0.3	+0.4	-0.1	+1.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.2	-0.1	+0.3	+0.2	+1.2
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.1	+0.4	+0.4	-0.4	+1.4
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.0	+0.8	+0.9	-0.0	+1.2