Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_13550	PS417_13555	PS417_13560	PS417_13565	PS417_13575
phage	JP1 MOI 1	+0.0	-1.4	-0.1	-0.2	-1.0
phage	P. simiae OR Antrim MOI 0.1	+0.2	-0.9	+0.1	-0.4	-0.8
phage	P. simiae ORA MOI 0.1	+0.3	-0.8	-0.2	+0.1	-1.1
phage	P. simiae Grant Run MOI 0.1	+0.4	-0.6	-0.3	-0.2	-0.8
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.2	-0.5	+0.2	+0.2	-1.0
carbon source	L-Valine (C)	+0.1	-1.0	+0.2	-0.2	-0.3
phage	P. simiae OR1 MOI 0.1	+0.4	-1.1	-0.1	-0.4	-0.0
motility	outer cut, LB soft agar motility assay	-0.3	-0.6	-0.0	-0.4	+0.5
soil	soil sample 6; outgrowth in LB	-0.1	-1.3	-0.1	+0.3	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	-0.7	-0.3	+0.4	+0.2
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	-0.4	+0.4	-0.2	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.4	+0.4	-0.4	+0.3
soil	soil sample 8; outgrowth in LB	+0.1	+0.5	-0.0	+0.3	-1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.1	+0.2	-0.5	-0.4	+0.7
agar plate interaction control	Taped volatile agar plate with no fungus	+0.4	+0.7	-0.0	-0.4	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.6	-0.1	+0.5	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.6	+0.5	-0.1	+0.0	-0.7
soil	soil sample 5; outgrowth in LB	+0.4	-0.5	+0.3	-0.2	+0.3
stress	methylglyoxal 0.032 vol%	-0.1	+0.3	+0.4	-0.7	+0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	+0.7	-0.1	-0.3	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.5	+0.0	+0.1	+1.1	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	-0.2	+1.1	+0.3	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	-0.4	+0.3	-0.1	+0.8
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	+0.4	-0.1	-0.4	+1.0
seeds	Growth on radish seeds for 24 hours	+0.2	-0.4	+0.2	+0.2	+1.1
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.3	-0.8	+0.3	+0.4	+1.2
no phage control	Time6-nophage	+0.1	+0.3	-0.1	+0.0	+1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	+0.0	+0.9	+0.3	+0.4
stress	Neomycin 0.04 mg/ml	+0.4	+0.9	-0.0	-0.1	+0.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	-0.3	+0.1	+0.2	+1.0