Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_13520	PS417_13525	PS417_13540	PS417_13545	PS417_13550
phage	JP1 MOI 10	-0.3	-0.4	-0.5	-0.5	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-0.7	-0.8	-0.5	+0.3
agar plate interaction control	Taped volatile agar plate with no fungus	-0.1	-1.0	+0.1	-0.8	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	-0.5	-0.2	-1.1	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.3	-0.2	-0.8	+0.1	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.2	+0.6	-1.4	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-0.5	+0.2	-1.0	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	-0.1	-0.2	-0.0	-1.2	+0.5
phage	P. simiae OR1 MOI 0.1	+0.1	-0.6	+0.1	-0.7	+0.4
carbon source	L-Valine (C)	-0.2	+0.9	+0.0	-1.3	+0.1
root	root sample 6; outgrowth in LB	+0.1	-0.2	+1.1	-1.2	-0.1
stress	Gentamicin 0.008 mg/ml	-0.1	-0.6	+0.6	-0.3	+0.2
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	+0.0	-0.7	-0.2	+0.8	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.2	+0.7	-0.4	-0.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	+0.7	-0.3	-0.5	+0.2
phage	JP1 MOI 10	-0.1	+0.3	+0.6	-0.7	+0.1
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x	+0.1	-0.5	+0.1	+0.9	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	-0.7	+0.3	+0.3	+0.6
supernatant	LB 0.5x with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x	-0.1	-0.2	+0.2	+0.8	-0.3
phage	P. simiae Grant Run MOI 10	-0.0	-0.9	+0.5	+0.8	+0.2
phage	P. simiae OR Antrim MOI 1	+0.2	-0.8	+0.3	+0.8	-0.0
carbon source	Deoxyribonucleic from herring sperm 5 mg/mL (C)	-0.3	-0.1	-0.3	+1.0	+0.4
carbon source	succinate (C)	+0.1	+1.2	+0.0	-0.6	-0.0
agar plate interaction control	Taped volatile agar plate with no fungus	+0.2	-0.4	+0.2	+0.6	+0.4
carbon source	Deoxyribonucleic from herring sperm 5 mg/mL (C)	+0.1	-0.3	-0.1	+1.5	+0.1
phage	Wcs_0.1	+0.2	+0.9	+0.6	+0.3	-0.1
phage	Wcs_1	+0.3	+0.8	+0.3	+0.3	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.4	+1.6	-0.0	-0.1	-0.0
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.0	+0.6	-0.1	+1.3	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-0.1	+0.9	+1.0	+0.1