Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF2652 and GFF2653 overlap by 4 nucleotidesGFF2653 and GFF2654 are separated by 47 nucleotidesGFF2654 and GFF2655 overlap by 4 nucleotidesGFF2655 and GFF2656 are separated by 155 nucleotides GFF2652 - Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-), at 70,965 to 72,119 GFF2652 GFF2653 - Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-), at 72,116 to 73,729 GFF2653 GFF2654 - Efflux ABC transporter for glutathione/L-cysteine, essential for assembly of bd-type respiratory oxidases => CydC subunit, at 73,777 to 75,492 GFF2654 GFF2655 - Efflux ABC transporter for glutathione/L-cysteine, essential for assembly of bd-type respiratory oxidases => CydD subunit, at 75,489 to 77,177 GFF2655 GFF2656 - Acyltransferase 3, at 77,333 to 78,508 GFF2656
Group Condition GFF2652 GFF2653 GFF2654 GFF2655 GFF2656
complex community Community=guar; Passage=4 -0.4 +0.2 -0.5 -0.9 +0.0
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL -0.2 -0.0 -0.4 -0.4 +0.0
phage phage_bap4 -0.5 -0.0 +0.2 -0.4 -0.0
phage phage_bap4 -0.3 -0.1 +0.0 -0.3 +0.0
phage phage_bap4 -0.1 +0.2 -0.4 -0.1 +0.1
no phage control no phage control -0.3 +0.0 +0.4 -0.2 -0.1
phage phage_bap4 -0.0 -0.1 +0.4 -0.3 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.3 -0.3 -0.1 -0.0 +0.1
complex community Community=Kojac gum; Passage=4 +0.3 +0.2 -0.7 +0.1 +0.2
vitamin M9 with Supernatant from Cyptococcus +0.2 -0.2 -0.1 -0.1 +0.2
vitamin M9 with Supernatant from Cyptococcus +0.0 +0.3 -0.5 +0.3 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.3 +0.1 -0.4 -0.1 +0.2
no phage control no phage control -0.4 -0.1 +0.4 +0.0 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL +0.2 +0.1 -0.4 +0.1 +0.0
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.2 +0.1 -0.3 +0.1 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.2 -0.1 +0.3 -0.1 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL -0.2 +0.1 -0.1 +0.2 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.3 +0.2 -0.0 -0.2 +0.2
complex community Community=guar; Passage=4 -0.2 +0.6 +0.3 +0.2 -0.5
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.1 -0.2 +0.2 +0.2 +0.2
complex community Community=guar; Passage=4 +0.3 +0.5 -0.3 +0.3 -0.2
complex community Community=Locust bean gum; Passage=1 +0.1 +0.3 +0.2 -0.1 +0.1
complex community Community=arabino-guar; Passage=4 +0.4 +0.2 +0.3 -0.2 +0.1
complex community Community=Locust bean gum; Passage=4 +0.4 +0.7 -0.3 +0.0 -0.1
complex community Community=Locust bean gum; Passage=4 +0.3 -0.0 +0.4 +0.1 +0.1
complex community Community=guar; Passage=4 +0.4 +0.6 -0.2 +0.3 -0.1
complex community Community=arabino-guar; Passage=4 +0.5 +0.2 +0.2 +0.1 +0.3
complex community Community=Locust bean gum; Passage=4 +0.1 +0.8 +0.2 -0.2 +0.4
complex community Community=arabino-guar; Passage=4 +0.9 +0.5 -0.1 +0.0 +0.2
complex community Community=arabino-guar; Passage=4 +0.7 +0.7 +0.3 +0.5 +0.3
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