Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_13460	PS417_13465	PS417_13470	PS417_13475	PS417_13480
agar plate interaction control	Taped volatile agar plate with no fungus	-0.3	+0.0	-0.6	-0.3	+0.1
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.3	-0.5	-0.2	+0.0	+0.1
phage	P. simiae OR Antrim MOI 0.1	-0.3	-0.6	-0.2	+0.1	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.7	+0.2	+0.1	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.3	+0.2	-0.3	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.2	-0.4	+0.1	-0.2	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	-0.6	-0.2	-0.3	+0.1
phage	P. simiae OR Antrim MOI 1	-0.0	+0.2	-0.6	+0.1	-0.2
phage	P. simiae OR Antrim MOI 10	+0.3	-0.2	-0.5	+0.2	-0.0
carbon source	2'-Deoxyinosine 5 mM (C)	-0.6	-0.1	+0.3	+0.1	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	+0.2	+0.3	-0.3	-0.2	+0.2
carbon source	Carbon source D-Mannitol 10 mM	-0.6	+0.1	+0.4	+0.0	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-0.5	+0.2	-0.0	+0.1	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	+0.6	-0.0	+0.2	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	+0.3	+0.6	-0.2	-0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	-0.3	+0.5	+0.0	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3	+0.8	+0.0	+0.2	-0.0
stress	Gentamicin 0.008 mg/ml	+0.5	-0.3	-0.1	+0.4	+0.2
phage	P. simiae Grant Run MOI 10	+0.2	+0.5	-0.1	+0.3	-0.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	+0.2	+0.3	+0.0	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.6	-0.2	+0.3	-0.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	+0.1	+0.7	-0.1	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6	-0.1	+0.2	+0.2	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	+0.3	+0.5	+0.0	+0.0
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	+0.1	+0.5	+0.4	+0.1	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.4	+0.7	+0.1	+0.2	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.4	+1.3	+0.1	+0.3	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.4	+0.1	+0.5	+0.2	+0.1
seeds	Growth on radish seeds for 72 hours	+0.6	+0.4	+0.5	+0.2	-0.1
carbon source	L-Valine (C)	+0.1	+1.0	+0.2	+0.1	+0.5