Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_13450	PS417_13455	PS417_13460	PS417_13465	PS417_13470
agar plate interaction control	Taped volatile agar plate with no fungus	+0.1	-3.7	-0.3	+0.0	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.0	-3.7	-0.3	+0.1	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.0	-1.9	-0.6	-0.0	-0.1
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	+0.1	-2.4	-0.3	+0.2	-0.1
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.3	-2.7	+0.1	-0.1	+0.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB	+0.1	-2.6	+0.0	+0.0	+0.1
agar plate interaction control	Taped volatile agar plate with no fungus	-0.2	-2.3	-0.3	+0.3	+0.2
supernatant control	Vogels_fungal_media; pH 5.5	+0.1	-1.9	-0.1	-0.1	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-0.1	-2.3	+0.1	+0.1	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.8X; growth supplemented with 0.4X LB	-0.1	-2.3	+0.1	+0.4	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	-2.1	+0.0	+0.3	+0.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	+0.2	-2.2	-0.1	+0.1	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	+0.1	-2.3	+0.0	+0.5	-0.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	+0.2	-2.1	+0.1	+0.2	-0.0
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	-0.1	-2.4	+0.1	+0.5	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3	-1.7	-0.3	+0.8	+0.0
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.0	-1.9	-0.1	+0.3	+0.3
supernatant control	Vogels_fungal_media; pH 5.5	+0.4	-2.1	+0.2	+0.1	+0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.2	-1.3	+0.1	-0.4	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-0.0	-1.9	+0.0	+0.4	+0.2
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	+0.2	-1.7	+0.0	-0.0	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	-1.8	+0.6	-0.1	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	+0.1	-1.7	+0.4	+0.1	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	-1.7	-0.0	+0.3	+0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	-1.4	-0.2	+0.2	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	+0.5	+0.5	-0.6	-0.2
carbon source	L-Valine (C)	+0.3	-0.9	+0.1	+1.0	+0.2
seeds	Growth on radish seeds for 72 hours	-0.6	+0.7	+0.6	+0.4	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.7	+0.1	-0.4	+1.3	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	+1.0	+0.4	+0.7	+0.1