Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 552 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_01330	PS417_01335	PS417_01340	PS417_01345	PS417_01350
soil	soil sample 7; outgrowth in LB	N.D.	-0.3	-2.3	N.D.	-0.3
soil	soil sample 2; outgrowth in LB	N.D.	+0.0	-2.0	N.D.	-0.1
soil	soil sample 3; outgrowth in LB	N.D.	+0.0	-1.8	N.D.	-0.1
soil	soil sample 4; outgrowth in LB	N.D.	+0.0	-1.6	N.D.	+0.2
root	root sample 6; outgrowth in LB	N.D.	-0.3	-0.8	N.D.	-0.3
seeds	Growth on radish seeds for 72 hours	N.D.	-0.0	-1.2	N.D.	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.4	-0.7	N.D.	-0.1
soil	soil sample 5; outgrowth in LB	N.D.	-0.1	-1.2	N.D.	+0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.3	-0.8	N.D.	-0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	+0.0	-1.3	N.D.	+0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	-0.3	-0.9	N.D.	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.1	-0.8	N.D.	-0.2
agar plate interaction control	Taped volatile agar plate with no fungus	N.D.	-0.1	-0.8	N.D.	-0.2
carbon source	Carbon source L-Citrulline 10 mM	N.D.	-0.3	-0.6	N.D.	-0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	+0.3	-1.1	N.D.	-0.2
motility	inner cut, LB soft agar motility assay	N.D.	-0.1	-1.0	N.D.	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	N.D.	+0.1	-1.1	N.D.	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.2	-0.9	N.D.	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.3	-1.1	N.D.	-0.1
solid stress	Fraxetin 3 mM; solid stress	N.D.	-0.1	-0.8	N.D.	+0.2
phage	P. simiae OR Antrim MOI 10	N.D.	+0.2	-1.1	N.D.	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.2	-0.9	N.D.	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	N.D.	+0.1	-0.8	N.D.	+0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	+0.3	-0.8	N.D.	+0.2
seeds	Growth on radish seeds for 24 hours	N.D.	+0.4	-0.8	N.D.	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.4	-0.9	N.D.	+0.2
carbon source	L-Valine (C)	N.D.	-0.4	+0.6	N.D.	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	+0.2	+1.1	N.D.	+0.1
stress	Gentamicin 0.008 mg/ml	N.D.	+0.3	+1.2	N.D.	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	+0.3	+2.4	N.D.	+0.1