Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_13385	PS417_13390	PS417_13395	PS417_13400	PS417_13405
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	-0.0	-0.1	-0.9	-0.4
carbon source	2'-Deoxyinosine 5 mM (C)	-0.2	+0.1	-0.5	-0.7	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-0.3	-0.8	-0.4	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-0.2	-0.3	-0.8	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	+0.2	-0.3	-0.4	-0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.4	+0.3	-0.6	+0.0	-0.5
root	root sample 6; outgrowth in LB	+0.5	-0.2	-0.4	-0.7	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.1	-0.9	-0.1	-0.2
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.1	-0.3	-0.6	+0.3	-0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.1	-0.0	-0.7	+0.4	-0.1
phage	P. simiae Grant Run MOI 0.1	+0.5	+0.0	+0.4	-1.2	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.1	+0.1	-0.6	+0.6	-0.3
carbon source	L-Valine (C)	+0.4	+0.5	+0.1	-1.1	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.5	-0.3	+0.6	-0.8	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.1	+0.5	+0.1	-0.6	-0.1
stress	Gentamicin 0.008 mg/ml	+0.5	+0.2	-0.3	-0.6	+0.4
motility	inner cut, LB soft agar motility assay	-0.2	+0.3	+0.2	+0.4	-0.3
solid stress	Fraxetin 2 mM; solid stress	-0.2	-0.2	+0.7	+0.3	-0.1
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x	+0.2	-0.4	+0.5	+0.3	+0.2
stress	Cisplatin 0.01 mg/ml	+0.1	+0.2	+1.1	-0.0	-0.4
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x	+0.2	-0.2	+0.5	+0.3	+0.1
stress	Dimethyl Sulfoxide 5 vol%	-0.3	+0.1	+0.7	+0.4	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.1	+0.2	+0.3	+0.4	+0.4
stress	R2A with Fusaric 120 ug/mL	-0.1	+0.2	+0.6	+0.3	+0.2
phage	Wcs_0.1	+0.1	+0.1	+1.2	+0.1	-0.2
stress	Nalidixic 0.025 mg/ml	+0.3	+0.1	+0.7	+0.4	+0.1
phage	Wcs_1	-0.2	-0.0	+2.2	+0.2	-0.4
stress	Tetracycline 0.001 mg/ml	+0.1	-0.0	+2.0	-0.1	+0.0
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.8	+0.2	+0.2	+1.0	+0.5
stress	Doxycycline hyclate 0.001 mg/ml	+0.1	+0.5	+5.5	+0.5	+0.0