Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_13340	PS417_13345	PS417_13350	PS417_13355	PS417_13360
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.3	-0.7	-0.4	-0.3	-0.3
carbon source	2'-Deoxyinosine 5 mM (C)	-0.3	-0.8	-0.8	-0.3	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.2	-0.5	-1.0	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.3	-0.7	-0.1	-0.2	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	-0.6	-0.4	-0.3	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-0.8	-0.0	-0.6	-0.0
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	-0.5	-0.5	+0.2	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	-0.3	-0.5	-0.1	-0.4
carbon source	Carbon source L-Citrulline 10 mM	+0.3	-0.5	-0.1	-0.5	-0.2
phage	JP1 MOI 0.1	-0.3	+0.3	-0.7	-0.2	+0.1
soil	soil sample 2; outgrowth in LB	+0.3	-0.8	+0.1	-0.2	-0.1
soil	soil sample 7; outgrowth in LB	+0.5	-0.2	+0.2	-0.9	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	-0.7	-0.2	+0.5	+0.3
phage	JP1 MOI 1	-0.8	+0.1	-0.3	+0.4	+0.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	-0.2	-0.3	-0.3	+0.5
seeds	Growth on radish seeds for 72 hours	-0.6	+0.5	+0.5	-0.5	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.9	-0.2	+0.4	+0.2
carbon source	Carbon source D-Mannitol 10 mM	+0.2	-0.5	+0.3	-0.3	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.7	-0.3	-0.4	-0.0	+0.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	-0.3	-0.4	+0.3	+0.2
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.6	+0.2	-0.6	-0.1	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.2	+0.4	-0.6	+0.2	-0.3
carbon source	Carbon source L-Citrulline 5 mM	+0.3	-0.4	+0.3	-0.3	+0.3
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.1	-0.4	+0.0	+0.8	-0.3
seeds	Growth on radish seeds for 72 hours	+0.3	+0.5	-0.2	+0.3	-0.4
carbon source	L-Valine (C)	-0.2	+0.4	-0.2	+0.3	+0.4
phage	FRSphage	-0.1	+0.3	+0.5	+0.2	-0.2
rhizosphere	rhizosphere sample 1; outgrowth in LB	+0.8	+0.0	+0.3	+0.0	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	+0.4	+0.7	+0.2	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	+1.1	+0.1	-0.0	+0.1