Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_13285	PS417_13290	PS417_13295	PS417_13300	PS417_13305
carbon source	2-Deoxy-D-Ribose (C)	+0.2	+0.2	-1.2	-0.7	-3.5
rhizosphere	rhizosphere sample 8; outgrowth in LB	+0.1	-0.1	-0.5	-0.5	-3.4
phage	P. simiae ORA MOI 0.1	-0.1	+0.3	-0.3	+0.4	-4.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.6	-1.0	-0.6	+0.1	-1.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3	+0.3	+0.1	+0.8	-3.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.6	-1.6	-0.2	-0.2	-0.3
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x	-0.0	+0.3	-0.0	-0.6	-2.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.3	-0.2	-0.8	-1.7
carbon source	2-Deoxy-D-ribonic lithium salt (C)	+0.2	+0.1	-0.6	-0.4	-1.9
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	+1.0	+0.0	-1.1	-2.0
soil	soil sample 4; outgrowth in LB	-0.0	-0.5	-1.2	+0.4	-0.4
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.2	-0.6	-1.1	-0.4	+0.5
soil	soil sample 3; outgrowth in LB	-0.2	+0.4	-1.5	+0.2	-0.6
phage	P. simiae Grant Run MOI 10	+0.1	+0.6	-0.4	-0.4	-1.4
seeds	Growth on radish seeds for 72 hours	+0.6	-0.2	+0.2	+0.0	-2.0
soil	soil sample 5; outgrowth in LB	-0.1	-0.8	-1.5	+0.4	+0.8
soil	soil sample 7; outgrowth in LB	+0.0	-0.8	-1.3	+0.6	+0.3
phage	P. simiae ORA MOI 0.1	+0.1	+0.4	-0.2	+0.6	-1.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	+0.2	-0.2	+0.6	-1.8
soil	soil sample 2; outgrowth in LB	-0.2	-0.8	-0.9	+0.8	+0.4
soil	soil sample 8; outgrowth in LB	+0.0	-0.3	-1.5	+0.4	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.6	-1.2	-0.4	+2.8	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+1.2	-0.2	+0.7	-1.4
phage	JP1 MOI 1	-0.0	+0.1	+0.1	-1.0	+1.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.2	+0.8	-0.4	+0.7	+0.6
supernatant control	Vogels_fungal_media 0.1X	+0.1	+1.2	-0.2	-0.4	+1.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.2	+0.5	+0.1	+0.5	+1.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.9	-0.3	+0.9	+1.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.8	-0.0	+1.1	+1.1
phage	P. simiae OR Antrim MOI 0.1	+0.2	+0.4	+0.0	+0.4	+1.8