Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_13275	PS417_13280	PS417_13285	PS417_13290	PS417_13295
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.8	-0.1	-0.6	-1.0	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-1.2	+0.4	-0.6	-1.2	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.2	+0.1	-0.3	-1.1	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.2	-0.1	-0.6	-1.6	-0.2
soil	soil sample 4; outgrowth in LB	-0.5	-0.1	-0.0	-0.5	-1.2
soil	soil sample 5; outgrowth in LB	-0.1	+0.1	-0.1	-0.8	-1.5
soil	soil sample 2; outgrowth in LB	-0.2	+0.1	-0.2	-0.8	-0.9
root	root sample 6; outgrowth in LB	+0.1	-0.2	-0.2	+0.1	-1.6
soil	soil sample 8; outgrowth in LB	-0.0	-0.0	+0.0	-0.3	-1.5
soil	soil sample 7; outgrowth in LB	+0.2	+0.1	+0.0	-0.8	-1.3
soil	soil sample 3; outgrowth in LB	-0.2	-0.1	-0.2	+0.4	-1.5
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.4	+0.1	-0.2	-0.6	-1.1
carbon source	2-Deoxy-D-Ribose (C)	-0.2	-0.2	+0.2	+0.2	-1.2
phage	JP1 MOI 1	+0.3	-0.4	-0.2	-0.8	-0.1
carbon source	2-Deoxy-D-Ribose (C)	+0.3	-0.1	+0.1	+0.1	-1.5
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	-0.3	+0.0	+0.5	-0.6
soil	soil sample 6; outgrowth in LB	+0.0	+0.1	-0.1	+0.3	-1.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	-0.1	-0.3	-1.0	+0.1
carbon source	2-Deoxy-D-Ribose 10 mM (C)	-0.3	+0.2	+0.1	+0.3	-0.9
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.6	+0.2	-0.1	-0.7	-0.4
carbon source	octanoate (C)	-0.5	+0.2	+0.1	+0.5	-0.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	-0.1	+0.1	+0.8	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	-0.2	-0.2	+0.5	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.3	-0.3	+0.4	+0.6	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.2	-0.2	+1.2	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.8	+0.2	+0.1	+0.3	-0.6
carbon source	L-Valine (C)	+0.3	+0.7	+0.2	+0.2	-0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.4	+0.2	-0.2	+1.0	+0.0
phage	JP1 MOI 10	+0.4	+0.1	-0.1	+1.1	-0.2
supernatant control	Vogels_fungal_media 0.1X	+0.2	+0.1	+0.1	+1.2	-0.2