Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_13270	PS417_13275	PS417_13280	PS417_13285	PS417_13290
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-1.0	-1.2	+0.4	-0.6	-1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.7	-1.2	+0.1	-0.3	-1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.4	-0.8	-0.1	-0.6	-1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.4	-0.2	-0.1	-0.6	-1.6
solid stress	80% Methanol 3 mM; solid stress	-0.5	-0.1	-0.1	-0.2	-1.0
solid stress	Fraxetin 3 mM; solid stress	-1.0	-0.1	-0.3	-0.0	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.6	-0.1	-0.3	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.0	+0.3	-0.2	+0.0	-0.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.1	-0.3	-0.1	+0.7	-0.4
seeds	Growth on radish seeds for 72 hours	-0.4	-0.4	-0.3	+0.6	-0.2
phage	JP1 MOI 1	+0.4	+0.3	-0.4	-0.2	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.9	+0.4	+0.2	-0.2	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	-0.4	+0.2	-0.3	+0.8
seeds	Growth on radish seeds for 72 hours	-0.7	+0.4	-0.2	+0.1	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.6	+0.1	-0.1	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.7	-0.5	+0.3	+0.0	-0.6
carbon source	octanoate (C)	-0.3	-0.5	+0.2	+0.1	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.8	-0.0	+0.1	-0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.0	+0.6	+0.2	-0.1	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	+0.1	-0.2	-0.2	+1.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.7	-0.0	+0.7	-0.2	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.1	-0.3	-0.3	+0.4	+0.6
supernatant control	Vogels_fungal_media 0.1X	+0.2	+0.4	+0.2	+0.3	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.6	+0.5	+0.0	+0.0	+0.9
root	root sample 6; outgrowth in LB	+1.1	+0.1	-0.2	-0.2	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	+0.4	+0.2	-0.2	+1.0
carbon source	L-Valine (C)	-0.4	+0.3	+0.7	+0.2	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	+0.1	+0.3	-0.0	+1.0
phage	JP1 MOI 10	+0.5	+0.4	+0.1	-0.1	+1.1
supernatant control	Vogels_fungal_media 0.1X	+0.5	+0.2	+0.1	+0.1	+1.2