Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_13230	PS417_13235	PS417_13240	PS417_13245	PS417_13250
rhizosphere	rhizosphere sample 8; outgrowth in LB	N.D.	-0.3	-0.5	-1.5	-0.3
phage	JP1 MOI 10	N.D.	-0.4	-0.5	-1.0	-0.5
seeds	Growth on radish seeds for 72 hours	N.D.	-0.4	-0.1	-0.6	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	-0.1	-0.3	+0.2	-1.5
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	-0.3	-0.1	+0.2	-1.3
phage	JP1 MOI 1	N.D.	+0.1	+0.2	-1.0	-0.8
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	-0.7	+0.4	-0.6	-0.4
carbon source	2'-Deoxyinosine 5 mM (C)	N.D.	-0.3	-0.9	+0.7	-0.7
phage	Wcs_0.1	N.D.	+0.3	-0.7	+0.2	-0.7
seeds	Growth on radish seeds for 72 hours	N.D.	+0.4	-0.6	+0.3	-1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.2	-0.4	-0.9	+0.5
stress	methylglyoxal 0.032 vol%	N.D.	-1.1	-1.0	+0.4	+0.7
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	-0.8	-0.2	-0.6	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	+0.1	+0.5	+0.6	-1.9
soil	soil sample 5; outgrowth in LB	N.D.	-0.5	-0.4	-1.0	+1.1
soil	soil sample 6; outgrowth in LB	N.D.	+0.1	-0.7	-0.5	+0.5
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	N.D.	-0.3	+0.2	-0.8	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.3	-0.7	+0.6	+0.4
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	N.D.	+0.2	+0.1	-0.9	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.8	+0.3	+0.7	+0.3
phage	Wcs_1	N.D.	-0.4	+0.6	+0.6	-0.4
agar plate interaction control	Taped volatile agar plate with no fungus	N.D.	+0.1	-0.7	+0.4	+1.0
phage	P. simiae ORA MOI 10	N.D.	-0.4	+0.5	+0.9	-0.2
carbon source	L-Valine (C)	N.D.	+0.1	-0.2	+1.3	-0.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.4	+1.7	+0.1	-0.2
phage	P. simiae OR Antrim MOI 1	N.D.	+0.4	+0.2	+0.9	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	N.D.	+0.5	-0.6	+0.8	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.4	+1.0	-1.0	+0.9
seeds	Growth on radish seeds for 72 hours	N.D.	+1.1	+0.2	+0.6	-0.6
soil	soil sample 2; outgrowth in LB	N.D.	-0.0	+0.9	+0.7	+0.5