Fitness for 5 genes in Variovorax sp. SCN45

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 61 experiments or choose conditions or try the comparative fitness browser

500 ntGFF2596 and GFF2597 overlap by 4 nucleotidesGFF2597 and GFF2598 overlap by 4 nucleotidesGFF2598 and GFF2599 are separated by 16 nucleotidesGFF2599 and GFF2600 are separated by 28 nucleotides GFF2596 - Multidrug resistance transporter, Bcr/CflA family, at 1,931 to 3,151 GFF2596 GFF2597 - 4-carboxymuconolactone decarboxylase (EC 4.1.1.44), at 3,148 to 3,582 GFF2597 GFF2598 - 3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2), at 3,579 to 4,793 GFF2598 GFF2599 - Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25), at 4,810 to 5,643 GFF2599 GFF2600 - Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25), at 5,672 to 6,595 GFF2600
Group Condition GFF2596 GFF2597 GFF2598 GFF2599 GFF2600
complex community Community=Locust bean gum; Passage=4 +0.2 -1.6 -0.7 +0.0 +0.4
vitamin M9 with calcium pantothenate 10 mg/mL +0.1 -0.3 -0.2 -0.6 -0.1
complex community Community=guar; Passage=4 +0.2 -0.2 -1.7 +1.0 -0.3
vitamin M9 with calcium pantothenate 10 mg/mL +0.0 +0.0 -0.2 -0.8 +0.0
complex community Community=Locust bean gum; Passage=4 -0.2 -1.7 -0.2 +1.1 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.1 -0.3 +0.1 -0.6 -0.0
complex community Community=arabino-guar; Passage=4 +0.1 -0.7 -0.2 +0.2 +0.0
complex community Community=guar; Passage=4 +0.2 -0.5 -0.6 +0.4 -0.0
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL +0.2 +0.1 -0.3 -0.3 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL +0.2 -0.0 -0.0 -0.6 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.0 +0.2 -0.5 -0.3 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.1 +0.4 -0.4 -0.7 +0.2
vitamin M9 with Supernatant from Cyptococcus +0.1 +0.3 -0.3 -0.3 -0.1
complex community Community=Locust bean gum; Passage=4 +0.3 -0.4 -0.7 +0.5 +0.0
complex community Community=Locust bean gum; Passage=4 +0.3 -1.3 -0.0 +0.6 +0.1
complex community Community=arabino-guar; Passage=4 +0.3 -0.2 -0.8 +0.3 +0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.1 +0.2 +0.0 -0.5 +0.0
complex community Community=arabino-guar; Passage=4 +0.3 +0.1 -0.1 -0.4 +0.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.1 +0.0 +0.4 -0.5 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.1 +0.1 +0.3 -0.5 +0.0
complex community Community=guar; Passage=4 +0.4 -0.7 +0.1 +0.3 +0.0
complex community Community=arabino-guar; Passage=4 +0.0 -0.2 -0.3 +1.0 -0.2
complex community Community=Locust bean gum; Passage=1 +0.1 -0.1 +0.1 +0.6 -0.0
phage phage_bap4 +0.1 +0.5 -0.1 +0.0 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL +0.3 +0.3 +0.1 -0.1 +0.1
complex community Community=Kojac gum; Passage=1 +0.2 -0.1 +0.1 +0.4 +0.3
phage phage_bap4 +0.0 +0.3 +0.2 +0.1 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.0 +0.4 +0.0 +0.4 +0.1
phage phage_bap4 +0.2 +0.1 +0.1 +0.3 +0.3
phage phage_bap4 +0.3 +0.3 +0.2 +0.1 +0.3
remove
GFF2596
plot		 remove
GFF2597
plot		 remove
GFF2598		 remove
GFF2599
plot		 remove
GFF2600
plot