Fitness for 5 genes in Pseudomonas simiae WCS417

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 552 experiments or choose conditions or try the comparative fitness browser

500 ntPS417_13180 and PS417_13185 are separated by 109 nucleotidesPS417_13185 and PS417_13190 overlap by 4 nucleotidesPS417_13190 and PS417_13195 are separated by 15 nucleotidesPS417_13195 and PS417_13200 are separated by 450 nucleotides PS417_13180: PS417_13180 - AraC family transcriptional regulator, at 2,879,562 to 2,880,587 _13180 PS417_13185: PS417_13185 - RND transporter, at 2,880,697 to 2,882,112 _13185 PS417_13190: PS417_13190 - transporter, at 2,882,109 to 2,885,288 _13190 PS417_13195: PS417_13195 - RND transporter MFP subunit, at 2,885,304 to 2,886,545 _13195 PS417_13200: PS417_13200 - isochorismate synthase, at 2,886,996 to 2,888,363 _13200
Group Condition PS417_13180 PS417_13185 PS417_13190 PS417_13195 PS417_13200
carbon source L-Isoleucine (C) -6.7 -0.3 -0.0 +0.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 -1.4 +0.0 -1.9 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.8 +0.5 -0.1 -0.8 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.9 -0.3 -0.2 +0.4 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X +0.1 -1.0 -0.8 -1.2 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -0.2 -0.6 -0.9 -1.0 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.5 -1.6 -0.0 -0.6 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.9 -1.1 -0.3 -0.0 N.D.
seeds Growth on radish seeds for 72 hours +0.5 -0.8 -0.1 -1.9 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 -1.7 -0.1 +0.1 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X +0.1 -0.4 -0.8 -1.0 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 -1.0 +0.2 -1.2 N.D.
stress 1-ethyl-3-methylimidazolium chloride 200 mM -0.4 -1.6 +0.1 +0.1 N.D.
carbon source L-Valine (C) -1.4 +0.3 -0.4 +0.1 N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.3 -1.8 +0.1 +0.1 N.D.
soil soil sample 2; outgrowth in LB -0.3 +0.7 -0.3 -1.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.9 -0.8 +0.1 +0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.2 -1.3 +0.8 -0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 -1.1 +0.4 -0.4 N.D.
phage P. simiae ORA MOI 0.1 -0.2 +1.0 +0.0 -1.1 N.D.
phage P. simiae ORA MOI 10 -0.5 +1.3 +0.2 -0.7 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 -1.0 +0.4 +1.0 N.D.
phage P. simiae Grant Run MOI 10 +0.8 +0.3 +0.2 -0.8 N.D.
phage P. simiae ORA MOI 0.1 +0.2 +1.1 +0.4 -0.6 N.D.
carbon source D-Glucose (C) +0.4 +1.3 +0.1 -0.4 N.D.
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 +0.8 +0.2 +1.2 N.D.
stress 2-Furfuraldehyde 0.03 vol% -0.1 +0.2 +0.9 +1.0 N.D.
nophagecontrol Only library +0.1 +1.8 -0.0 +0.4 N.D.
stress 2-Furfuraldehyde 0.06 vol% +0.2 +1.0 +0.9 +1.0 N.D.
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.1 +0.7 +0.4 +2.3 N.D.
remove
PS417_13180
plot		 remove
PS417_13185
plot		 remove
PS417_13190		 remove
PS417_13195
plot		 remove
PS417_13200
plot