Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_13135	PS417_13140	PS417_13145	PS417_13150	PS417_13155
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	-3.0	-1.1	N.D.	+0.1
soil	soil sample 5; outgrowth in LB	+0.4	-4.7	+0.5	N.D.	-0.2
seeds	Growth on radish seeds for 72 hours	+0.5	-2.3	-0.4	N.D.	-0.5
stress	Doxycycline hyclate 0.001 mg/ml	+0.2	-1.5	-1.2	N.D.	+0.0
seeds	Growth on radish seeds for 72 hours	-0.1	-1.4	-0.8	N.D.	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.8	-3.4	-0.3	N.D.	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.2	-2.4	-0.5	N.D.	+0.3
stress	1-ethyl-3-methylimidazolium chloride 200 mM	+0.4	-1.6	-0.8	N.D.	-0.1
phage	P. simiae Grant Run MOI 0.1	-0.2	-1.3	-0.5	N.D.	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.1	-1.1	-0.9	N.D.	-0.2
phage	P. simiae Grant Run MOI 0.1	-0.1	-2.0	+0.3	N.D.	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.1	-2.1	-0.1	N.D.	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	+0.1	-2.5	+0.6	N.D.	-0.1
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.4	-1.6	-1.0	N.D.	+0.2
seeds	Growth on radish seeds for 24 hours	+0.4	-1.1	-1.0	N.D.	-0.1
root	root sample 6; outgrowth in LB	-0.5	-0.4	-1.0	N.D.	+0.3
stress	1-ethyl-3-methylimidazolium acetate 35 mM	+0.2	-0.7	-1.1	N.D.	+0.1
phage	JP1 MOI 10	-1.0	+0.5	-0.7	N.D.	-0.1
carbon source	2'-Deoxyinosine 5 mM (C)	-0.3	+1.0	-1.1	N.D.	-0.4
phage	JP1 MOI 1	-0.1	+1.2	-1.2	N.D.	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.9	-1.1	-0.4	N.D.	+0.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	-0.7	+1.0	N.D.	-0.6
phage	P. simiae OR Antrim MOI 0.1	-0.2	-0.9	+1.0	N.D.	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.9	-1.4	+0.7	N.D.	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	+0.9	-0.7	N.D.	-0.2
nitrogen source	Ammonium chloride (N)	-0.1	+1.3	-0.6	N.D.	+0.2
nophagecontrol	Only library	-0.3	+0.9	+1.2	N.D.	-0.4
agar plate interaction control	Taped volatile agar plate with no fungus	-0.1	+1.1	+0.8	N.D.	-0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.7	+1.2	+0.5	N.D.	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	+3.5	+0.9	N.D.	+0.1