Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 552 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_13115	PS417_13120	PS417_13125	PS417_13130	PS417_13135
carbon source	octanoate (C)	N.D.	-1.9	+0.2	N.D.	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.4	-0.2	N.D.	-0.9
carbon source	octanoate (C)	N.D.	-1.8	+0.4	N.D.	-0.0
stress	methylglyoxal 0.032 vol%	N.D.	-0.8	-0.6	N.D.	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-0.1	-0.5	N.D.	-0.7
solid stress	Fraxetin 3 mM; solid stress	N.D.	-1.3	+0.3	N.D.	-0.1
solid stress	Fraxetin 3 mM; solid stress	N.D.	-1.0	+0.1	N.D.	-0.1
stress	Doxycycline hyclate 0.001 mg/ml	N.D.	-1.1	-0.0	N.D.	+0.2
solid stress	Fraxetin 3 mM; solid stress	N.D.	-1.3	+0.1	N.D.	+0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	-0.5	+0.2	N.D.	-0.5
stress	Nalidixic 0.015 mg/ml	N.D.	-0.6	+0.3	N.D.	-0.4
stress	Nalidixic 0.025 mg/ml	N.D.	-0.8	+0.3	N.D.	-0.1
solid stress	Fraxetin 3 mM; solid stress	N.D.	-0.6	+0.3	N.D.	-0.3
phage	JP1 MOI 10	N.D.	+0.1	+0.5	N.D.	-1.0
stress	Gentamicin 0.008 mg/ml	N.D.	+0.7	-0.2	N.D.	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	N.D.	-0.1	-0.5	N.D.	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.4	+0.2	N.D.	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	-0.5	+0.4	N.D.	+0.2
rhizosphere	rhizosphere sample 2; outgrowth in LB	N.D.	+0.4	-0.5	N.D.	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.1	-0.6	N.D.	+0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.4	+0.4	N.D.	-0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	+0.3	-0.6	N.D.	+0.7
solid stress	Fraxetin 0.5 mM; solid stress	N.D.	-0.4	+0.2	N.D.	+0.6
root	root sample 6; outgrowth in LB	N.D.	+0.6	+0.4	N.D.	-0.5
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.3	+0.1	N.D.	+0.9
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.2	+0.9	N.D.	+0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	+0.3	-0.1	N.D.	+0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.2	+0.3	N.D.	+0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-0.1	+0.7	N.D.	+0.9
stress	Neomycin 0.04 mg/ml	N.D.	+4.9	-0.3	N.D.	-0.1