Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_13110 and PS417_13115 are separated by 141 nucleotidesPS417_13115 and PS417_13120 are separated by 297 nucleotidesPS417_13120 and PS417_13125 are separated by 21 nucleotidesPS417_13125 and PS417_13130 are separated by 3 nucleotides PS417_13110: PS417_13110 - methylase, at 2,864,997 to 2,865,809 _13110 PS417_13115: PS417_13115 - hypothetical protein, at 2,865,951 to 2,866,337 _13115 PS417_13120: PS417_13120 - aspartyl beta-hydroxylase, at 2,866,635 to 2,867,534 _13120 PS417_13125: PS417_13125 - ATP-dependent DNA ligase, at 2,867,556 to 2,870,015 _13125 PS417_13130: PS417_13130 - DNA repair protein, at 2,870,019 to 2,870,852 _13130
Group Condition PS417_13110 PS417_13115 PS417_13120 PS417_13125 PS417_13130
stress methylglyoxal 0.032 vol% -0.2 N.D. -0.8 -0.6 N.D.
carbon source octanoate (C) -0.1 N.D. -1.8 +0.4 N.D.
carbon source octanoate (C) +0.1 N.D. -1.9 +0.2 N.D.
solid stress Fraxetin 3 mM; solid stress -0.0 N.D. -1.3 +0.1 N.D.
soil soil sample 3; outgrowth in LB -0.2 N.D. -0.2 -0.7 N.D.
stress Doxycycline hyclate 0.001 mg/ml +0.0 N.D. -1.1 -0.0 N.D.
solid stress Fraxetin 3 mM; solid stress -0.2 N.D. -1.0 +0.1 N.D.
stress Lomefloxacin 0.0001 mM -0.1 N.D. -0.7 -0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.7 N.D. +0.1 -0.2 N.D.
solid stress Fraxetin 3 mM; solid stress +0.0 N.D. -1.3 +0.3 N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.2 N.D. +0.2 -0.7 N.D.
stress Nalidixic 0.025 mg/ml -0.2 N.D. -0.8 +0.3 N.D.
solid stress Fraxetin 1 mM; solid stress -0.4 N.D. -0.4 +0.3 N.D.
stress Nalidixic 0.015 mg/ml -0.1 N.D. -0.6 +0.3 N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.1 N.D. +0.3 -0.6 N.D.
stress TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 2500 uM; timepoint 2 -0.2 N.D. -0.7 +0.4 N.D.
rhizosphere rhizosphere sample 2; outgrowth in LB -0.2 N.D. +0.4 -0.5 N.D.
phage P. simiae ORA MOI 10 +0.3 N.D. -0.7 +0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.4 N.D. +0.1 -0.6 N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.3 N.D. +0.5 -0.2 N.D.
phage JP1 MOI 10 -0.5 N.D. +0.1 +0.5 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.3 N.D. -0.5 +0.4 N.D.
carbon source acetate (C) +0.5 N.D. -0.5 +0.2 N.D.
carbon source D-Xylose (C) +0.3 N.D. -0.4 +0.3 N.D.
seeds Growth on radish seeds for 72 hours -0.2 N.D. +0.7 -0.1 N.D.
nitrogen source Adenine (N) +0.2 N.D. +0.6 -0.3 N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 N.D. -0.2 +0.9 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 N.D. +0.4 +0.4 N.D.
root root sample 6; outgrowth in LB +0.0 N.D. +0.6 +0.4 N.D.
stress Neomycin 0.04 mg/ml +1.0 N.D. +4.9 -0.3 N.D.
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