Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_13090	PS417_13095	PS417_13100	PS417_13105	PS417_13110
soil	soil sample 3; outgrowth in LB	+0.1	-0.2	-0.4	-0.8	-0.2
phage	Wcs_1	-0.8	-0.1	-0.3	-0.3	-0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.8	+0.2	-0.0	-0.2	-0.7
seeds	Growth on radish seeds for 72 hours	-0.8	-0.2	-0.5	+0.2	-0.2
soil	soil sample 6; outgrowth in LB	-1.3	-0.1	-0.4	+0.2	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	+0.4	-0.5	-0.4	-0.1
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.9	-0.2	+0.1	+0.3	+0.0
agar plate interaction control	Taped volatile agar plate with no fungus	+0.2	-0.0	-1.2	+0.5	-0.1
carbon source	2'-Deoxyinosine 5 mM (C)	-0.9	+0.2	+0.2	-0.2	+0.3
liquid stress	Fraxetin 0.5 mM; liquid stress	+0.6	-0.1	-0.7	-0.1	-0.0
carbon source	L-Valine (C)	-1.2	-0.0	-0.0	+0.2	+0.7
phage	JP1 MOI 10	+1.3	-0.4	-0.5	-0.1	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.3	-0.8	+0.3	+0.3
stress	methylglyoxal 0.032 vol%	-0.8	+0.1	+0.4	+0.5	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.9	-0.1	-0.5	-0.3	+0.3
liquid stress	Scopoletin 3 mM; liquid stress	+0.8	+0.2	-0.1	-0.2	-0.5
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.8	+0.3	-0.6	-0.1	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	+0.4	+0.2	+0.3	+0.0
carbon source	Carbon source L-Citrulline 5 mM	+0.6	+0.2	-0.3	+0.2	-0.3
phage	P. simiae Grant Run MOI 0.1	+0.8	+0.5	-0.3	-0.1	-0.1
carbon source	D-Glucosamine Hydrochloride (C)	-0.3	+0.2	+0.8	+0.2	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6	+0.5	+0.2	-0.1	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	+0.1	+0.3	-0.3	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.3	+0.2	-0.2	+0.5	+0.4
seeds	Growth on radish seeds for 72 hours	+1.5	-0.4	-0.3	+0.2	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.6	+0.5	-0.2	+0.1	+0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.9	-0.2	+0.8	+0.3	-0.2
nitrogen source	Adenine (N)	+0.5	+0.1	+0.7	+0.2	+0.2
stress	Neomycin 0.04 mg/ml	+0.2	+0.2	+0.8	+0.7	+1.0
carbon source	L-Valine (C)	+0.7	+0.8	+0.5	+0.6	+0.5