Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_01300 and PS417_01305 are separated by 26 nucleotidesPS417_01305 and PS417_01310 overlap by 4 nucleotidesPS417_01310 and PS417_01315 are separated by 36 nucleotidesPS417_01315 and PS417_01320 overlap by 4 nucleotides PS417_01300: PS417_01300 - thioesterase, at 281,761 to 282,216 _01300 PS417_01305: PS417_01305 - Fis family transcriptional regulator, at 282,243 to 283,619 _01305 PS417_01310: PS417_01310 - ATPase, at 283,616 to 285,424 _01310 PS417_01315: PS417_01315 - dTDP-4-dehydrorhamnose reductase, at 285,461 to 286,330 _01315 PS417_01320: PS417_01320 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 286,327 to 286,872 _01320
Group Condition PS417_01300 PS417_01305 PS417_01310 PS417_01315 PS417_01320
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -2.9 +0.3 -0.4 N.D. N.D.
root root sample 6; outgrowth in LB -1.8 +0.3 -0.6 N.D. N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml -1.1 +0.0 -0.9 N.D. N.D.
soil soil sample 5; outgrowth in LB -1.3 +0.1 -0.8 N.D. N.D.
soil soil sample 6; outgrowth in LB -0.6 +0.0 -1.3 N.D. N.D.
seeds Growth on radish seeds for 72 hours -0.8 -0.0 -1.0 N.D. N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.7 -0.3 -0.7 N.D. N.D.
carbon source succinate (C) +0.1 -1.0 -0.7 N.D. N.D.
liquid stress Scopoletin 3 mM; liquid stress -1.2 -0.0 -0.4 N.D. N.D.
carbon source succinate (C) -0.1 -1.1 -0.4 N.D. N.D.
nophagecontrol Only library -0.0 -0.5 -1.0 N.D. N.D.
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.9 +0.2 -0.8 N.D. N.D.
solid stress Fraxetin 2 mM; solid stress -0.4 -0.4 -0.7 N.D. N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.1 +0.2 -0.4 N.D. N.D.
liquid stress Fraxetin 3 mM; liquid stress -1.1 -0.2 +0.2 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 -0.5 -1.1 N.D. N.D.
supernatant control Vogels_fungal_media 0.1X -1.2 +0.5 -0.0 N.D. N.D.
phage JP1 MOI 1 +0.8 -0.5 -1.0 N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 -0.4 -0.6 N.D. N.D.
nitrogen source Putrescine (N) +0.5 -0.2 -0.8 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 -0.5 -0.6 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.5 +0.1 -0.9 N.D. N.D.
carbon source L-Valine (C) -0.5 +0.8 -0.4 N.D. N.D.
seeds Growth on radish seeds for 24 hours -0.7 +0.8 -0.1 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.1 -0.8 +0.0 N.D. N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.6 +0.1 +0.9 N.D. N.D.
seeds Growth on radish seeds for 72 hours -0.5 +1.0 +0.4 N.D. N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.6 +1.3 +0.3 N.D. N.D.
motility inner cut, LB soft agar motility assay +0.7 +0.5 +0.4 N.D. N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml +1.2 +0.4 +0.2 N.D. N.D.
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