Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_13075	PS417_13080	PS417_13085	PS417_13090	PS417_13095
soil	soil sample 6; outgrowth in LB	-1.7	N.D.	-0.7	-1.3	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-3.4	N.D.	-0.2	-0.6	+0.4
rhizosphere	rhizosphere sample 2; outgrowth in LB	-1.5	N.D.	-0.5	-1.1	-0.1
phage	P. simiae ORA MOI 0.1	-2.2	N.D.	-0.5	-0.2	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.7	N.D.	+0.1	-0.3	-0.0
phage	P. simiae ORA MOI 0.1	-2.9	N.D.	+0.2	-0.3	+0.2
soil	soil sample 4; outgrowth in LB	-1.2	N.D.	-1.5	+0.2	-0.3
carbon source	D-Glucose (C)	-1.5	N.D.	-0.6	-0.3	-0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-2.4	N.D.	+0.1	-0.1	-0.1
no phage control	Time6-nophage	-2.0	N.D.	-0.5	+0.3	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-2.2	N.D.	-0.1	+0.1	-0.1
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-2.9	N.D.	+0.1	+0.6	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.8	N.D.	+0.4	+0.9	-0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-2.5	N.D.	-0.1	+0.8	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	N.D.	-0.4	-0.7	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-1.7	N.D.	+0.4	+0.2	+0.0
solid stress	Fraxetin 3 mM; solid stress	-0.6	N.D.	-1.0	+0.6	+0.2
phage	JP1 MOI 10	-1.8	N.D.	+0.2	+1.3	-0.4
carbon source	Carbon source D-Mannitol 5 mM	-1.3	N.D.	-0.3	+0.8	+0.3
stress	Nalidixic 0.025 mg/ml	-1.0	N.D.	-0.4	+1.0	+0.2
seeds	Growth on radish seeds for 24 hours	+1.2	N.D.	-0.4	-0.2	-0.8
phage	P. simiae Grant Run MOI 0.1	-1.4	N.D.	+0.1	+0.8	+0.5
seeds	Growth on radish seeds for 72 hours	+0.7	N.D.	+0.8	-0.8	-0.2
carbon source	2'-Deoxyinosine 5 mM (C)	+0.8	N.D.	+0.7	-0.9	+0.2
agar plate interaction control	Taped volatile agar plate with no fungus	-0.5	N.D.	+0.8	+0.9	-0.2
carbon source	L-Valine (C)	-0.7	N.D.	+0.3	+0.7	+0.8
seeds	Growth on radish seeds for 72 hours	+0.9	N.D.	-0.4	+1.5	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.8	N.D.	+0.5	+0.6	+0.5
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+2.8	N.D.	+0.1	-0.5	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+1.0	N.D.	+1.9	+0.4	-0.0