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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingobium sp. HT1-2
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Top 18 experiments (either direction), sorted by average fitness
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500 nt
GFF2563 and GFF2564 are separated by 6 nucleotides
GFF2564 and GFF2565 are separated by 152 nucleotides
GFF2565 and GFF2566 overlap by 4 nucleotides
GFF2566 and GFF2567 are separated by 94 nucleotides
GFF2563 - hypothetical protein, at 2,579,838 to 2,580,149
GFF2563
GFF2564 - YpfJ protein, zinc metalloprotease superfamily, at 2,580,156 to 2,581,046
GFF2564
GFF2565 - Ferredoxin reductase, at 2,581,199 to 2,582,377
GFF2565
GFF2566 - 3-hydroxybutyrate dehydrogenase (EC 1.1.1.30), at 2,582,374 to 2,583,165
GFF2566
GFF2567 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 2,583,260 to 2,584,126
GFF2567
Group
Condition
GFF2563
GFF2564
GFF2565
GFF2566
GFF2567
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.1
-0.0
-1.0
-1.0
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.3
-0.0
-0.5
-0.8
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.3
-0.1
-0.4
-0.4
+0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.6
+0.1
-0.1
-0.2
-0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.3
-0.0
-0.3
-0.1
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.1
-0.3
-0.2
-0.2
+0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.1
+0.1
-0.1
-0.2
-0.2
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.0
+0.1
-0.1
-0.4
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.2
+0.1
-0.0
-0.1
-0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.0
-0.0
-0.3
-0.0
-0.2
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.1
+0.1
-0.1
-0.2
-0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.2
-0.0
-0.1
-0.0
+0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.1
-0.0
-0.0
-0.2
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.2
-0.0
-0.1
-0.1
+0.2
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.2
-0.1
-0.1
+0.1
+0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.3
+0.2
+0.1
-0.1
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.0
+0.1
-0.2
-0.1
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.3
+0.2
-0.1
+0.2
+0.1
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