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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingobium sp. HT1-2
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Top 18 experiments (either direction), sorted by average fitness
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500 nt
GFF2559 and GFF2560 overlap by 4 nucleotides
GFF2560 and GFF2561 overlap by 8 nucleotides
GFF2561 and GFF2562 are separated by 86 nucleotides
GFF2562 and GFF2563 are separated by 84 nucleotides
GFF2559 - FIG00005326: uncharacterized protein, at 2,575,522 to 2,576,331
GFF2559
GFF2560 - Thiol peroxidase, Bcp-type (EC 1.11.1.15), at 2,576,328 to 2,576,789
GFF2560
GFF2561 - Glutamine synthetase adenylyl-L-tyrosine phosphorylase (EC 2.7.7.89) / Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42), at 2,576,782 to 2,579,475
GFF2561
GFF2562 - hypothetical protein, at 2,579,562 to 2,579,753
GFF2562
GFF2563 - hypothetical protein, at 2,579,838 to 2,580,149
GFF2563
Group
Condition
GFF2559
GFF2560
GFF2561
GFF2562
GFF2563
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.0
+0.1
+0.1
-0.3
-0.6
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.2
-0.5
+0.2
-0.0
-0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.0
-0.4
+0.2
+0.0
-0.2
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.2
+0.0
+0.1
-0.0
-0.3
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.1
-0.2
+0.4
-0.5
-0.2
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.1
-0.1
+0.2
-0.3
-0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.4
-0.2
+0.3
-0.1
+0.3
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.0
-0.1
+0.1
+0.1
-0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.1
+0.1
+0.2
-0.1
-0.3
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.1
-0.0
+0.2
+0.1
-0.3
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.0
-0.0
+0.2
-0.2
+0.0
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.1
-0.0
+0.2
-0.0
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.1
-0.2
+0.3
-0.0
+0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.2
+0.1
+0.4
-0.1
-0.3
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.0
-0.1
+0.3
+0.0
-0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.1
+0.0
+0.2
+0.0
-0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.1
-0.0
+0.3
+0.0
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.1
-0.4
+0.4
+0.5
-0.1
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