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Cofit
Protein
Homologs
Fitness for 5 genes in
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF2556 and GFF2557 are separated by 285 nucleotides
GFF2557 and GFF2558 are separated by 90 nucleotides
GFF2558 and GFF2559 overlap by 8 nucleotides
GFF2559 and GFF2560 are separated by 13 nucleotides
GFF2556 - NAD-dependent malic enzyme (EC 1.1.1.38), at 71,428 to 73,125
GFF2556
GFF2557 - Alcohol dehydrogenase (EC 1.1.1.1), at 73,411 to 74,421
GFF2557
GFF2558 - Formate dehydrogenase N gamma subunit (EC 1.2.1.2), at 74,512 to 75,168
GFF2558
GFF2559 - Formate dehydrogenase N beta subunit (EC 1.2.1.2), at 75,161 to 76,045
GFF2559
GFF2560 - Formate dehydrogenase N alpha subunit (EC 1.2.1.2) @ selenocysteine-containing, at 76,059 to 79,106
GFF2560
Group
Condition
GFF2556
GFF2557
GFF2558
GFF2559
GFF2560
phage
Ffm_phage 10 MOI; agar plate assay
-0.8
+0.0
-0.1
-0.5
-0.1
phage
LB_plus_SM_buffer with 6F2_phage 0.1875 MOI
-0.4
-0.5
+0.1
-0.6
+0.0
phage
LB_plus_SM_buffer with 6D2_phage 15 MOI
-0.2
-0.3
-0.1
+0.0
-0.2
phage
LB_plus_SM_buffer with Ffm_phage 0.000001875 MOI
-0.1
+0.0
-0.1
-0.4
-0.2
phage
LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI
-0.1
+0.1
-0.2
-0.1
-0.5
phage
LB_plus_SM_buffer with Ffm_phage 18.75 MOI
-0.2
-0.0
+0.1
-0.4
-0.2
phage
LB_plus_SM_buffer with 6C2_phage 0.25 MOI
+0.2
-0.2
-0.3
-0.1
+0.0
phage
phi19h1_phage 15 MOI
-0.3
-0.0
+0.2
-0.3
-0.1
phage
LB_plus_SM_buffer with 6C2_phage 15 MOI
-0.3
-0.1
-0.1
+0.3
-0.0
phage
LB_plus_SM_buffer with FelixO1_phage (old) 15 MOI
+0.0
-0.2
-0.1
+0.2
-0.2
phage
phi19h1_phage 15 MOI
-0.3
+0.3
+0.1
-0.2
-0.1
phage
LB_plus_SM_buffer with P22_phage 15 MOI
-0.4
+0.2
-0.1
+0.3
-0.1
phage
LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI
+0.3
+0.2
-0.3
+0.0
-0.3
phage
LB_plus_SM_buffer with ES18h1_phage 0.00075 MOI
-0.4
+0.1
-0.0
+0.5
-0.2
phage
LB_plus_SM_buffer with S16_phage 15 MOI
-0.1
-0.2
-0.1
+0.4
-0.1
phage
LB_plus_SM_buffer with FelixO1_phage (wt new) 0.075 MOI
+0.6
-0.1
-0.1
-0.2
-0.1
phage
LB_plus_SM_buffer with ES18h1_phage 0.75 MOI
-0.4
+0.4
+0.1
-0.2
+0.3
phage
LB_plus_SM_buffer with FelixO1_phage (wt new) 0.75 MOI
+0.5
-0.0
-0.2
+0.1
-0.2
phage
LB_plus_SM_buffer with EIP16_phage 8.75 MOI
+0.4
-0.2
+0.1
+0.0
-0.1
phage
LB_plus_SM_buffer with Br60_phage 0.00005 MOI
+0.1
-0.2
+0.3
+0.1
+0.0
phage
LB_plus_SM_buffer with FelixO1_phage 0.05 MOI
+0.6
-0.0
-0.0
-0.0
-0.1
phage
LB_plus_SM_buffer with 8C2_phage 15 MOI
-0.1
+0.2
-0.0
+0.5
-0.1
phage
6H2_phage 10 MOI; agar plate assay
-0.2
+0.3
+0.1
+0.3
-0.0
phage
LB_plus_SM_buffer with FelixO1_phage (old) 15 MOI
+0.7
+0.2
-0.3
+0.0
-0.1
phage
LB_plus_SM_buffer with 8C2_phage 15 MOI
-0.2
+0.4
+0.0
+0.5
-0.1
phage
LB_plus_SM_buffer with FelixO1_phage (wt_new) 2 MOI
+0.5
+0.5
-0.2
+0.2
-0.3
phage
LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI
+0.1
-0.0
-0.1
+0.7
+0.1
phage
LB_plus_SM_buffer with Br60_phage 0.000005 MOI
+0.0
+0.3
+0.0
+0.5
+0.1
phage
LB_plus_SM_buffer with Br60_phage 0.0005 MOI
+0.1
+0.1
+0.7
+0.3
+0.4
phage
LB_plus_SM_buffer with FelixO1_phage 0.5 MOI
+1.4
+0.6
-0.3
+0.1
+0.1
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