Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_13020	PS417_13025	PS417_13030	PS417_13035	PS417_13040
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.6	N.D.	N.D.	-0.1	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.7	N.D.	N.D.	-0.0	-0.2
soil	soil sample 2; outgrowth in LB	-0.6	N.D.	N.D.	-0.1	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.5	N.D.	N.D.	-0.1	-0.2
phage	P. simiae Grant Run MOI 10	-0.5	N.D.	N.D.	-0.0	-0.3
phage	JP1 MOI 1	-0.4	N.D.	N.D.	+0.1	-0.4
phage	Wcs_0.1	-0.5	N.D.	N.D.	+0.1	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	N.D.	N.D.	+0.2	-0.4
motility	outer cut, LB soft agar motility assay	-0.6	N.D.	N.D.	-0.1	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	N.D.	N.D.	+0.2	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	N.D.	N.D.	+0.0	+0.2
solid stress	Fraxetin 3 mM; solid stress	-0.6	N.D.	N.D.	-0.1	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	N.D.	N.D.	+0.1	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	N.D.	N.D.	+0.3	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	-0.5	N.D.	N.D.	+0.0	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.5	N.D.	N.D.	-0.0	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.5	N.D.	N.D.	+0.1	+0.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	N.D.	N.D.	+0.3	+0.2
stress	TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 1	+0.4	N.D.	N.D.	-0.1	-0.2
phage	P. simiae OR1 MOI 0.1	+0.6	N.D.	N.D.	-0.0	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	N.D.	N.D.	+0.1	-0.3
phage	JP1 MOI 0.1	+0.4	N.D.	N.D.	+0.1	-0.3
phage	P. simiae Grant Run MOI 0.1	+0.5	N.D.	N.D.	+0.1	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.8	N.D.	N.D.	-0.0	-0.2
seeds	Growth on radish seeds for 24 hours	+0.4	N.D.	N.D.	-0.1	+0.4
phage	JP1 MOI 10	+0.7	N.D.	N.D.	+0.2	-0.0
phage	P. simiae OR Antrim MOI 1	+0.7	N.D.	N.D.	+0.2	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.7	N.D.	N.D.	+0.2	+0.0
agar plate interaction control	Taped volatile agar plate with no fungus	+0.4	N.D.	N.D.	+0.0	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.0	N.D.	N.D.	+0.0	+0.9