Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_12985 and PS417_12990 are separated by 64 nucleotidesPS417_12990 and PS417_12995 are separated by 28 nucleotidesPS417_12995 and PS417_13000 are separated by 322 nucleotidesPS417_13000 and PS417_13005 are separated by 13 nucleotides PS417_12985: PS417_12985 - DNA-binding protein, at 2,836,312 to 2,837,739 _12985 PS417_12990: PS417_12990 - nucleoside hydrolase, at 2,837,804 to 2,838,880 _12990 PS417_12995: PS417_12995 - MFS transporter permease, at 2,838,909 to 2,840,219 _12995 PS417_13000: PS417_13000 - isochorismatase, at 2,840,542 to 2,841,174 _13000 PS417_13005: PS417_13005 - Asp/Glu racemase, at 2,841,188 to 2,841,940 _13005
Group Condition PS417_12985 PS417_12990 PS417_12995 PS417_13000 PS417_13005
phage P. simiae OR Antrim MOI 10 -0.4 -0.6 -0.0 N.D. -0.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8 -0.6 +0.2 N.D. -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.0 +0.4 -0.6 N.D. -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.8 -0.8 -0.2 N.D. +0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.1 +0.1 -0.2 N.D. +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 -1.0 -0.4 N.D. +0.1
phage P. simiae Grant Run MOI 0.1 -0.2 -0.9 -0.2 N.D. +0.4
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 +0.5 -0.2 N.D. -0.5
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.6 -0.8 +0.1 N.D. -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 -0.0 +0.2 N.D. +0.5
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.9 +0.6 +0.2 N.D. +0.0
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 -0.5 +0.3 N.D. +0.6
phage P. simiae ORA MOI 0.1 -0.7 +0.5 +0.4 N.D. -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.5 +0.6 +0.2 N.D. -0.2
phage JP1 MOI 1 -0.6 +1.1 +0.1 N.D. -0.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.7 -0.0 +0.7 N.D. +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 +0.9 -0.2 N.D. -0.3
carbon source L-Valine (C) -0.1 +0.8 +0.6 N.D. -0.6
stress 1-ethyl-3-methylimidazolium chloride 200 mM +0.5 +0.4 +0.3 N.D. -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.6 +0.2 -0.4 N.D. +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.0 +1.0 +0.2 N.D. -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 +1.0 +0.1 N.D. -0.6
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 +1.0 +0.1 N.D. -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.2 +1.4 +0.1 N.D. -0.1
phage P. simiae OR1 MOI 0.1 -0.0 +0.8 -0.1 N.D. +0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.8 +0.0 -0.3 N.D. +0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.7 +0.7 -0.0 N.D. +0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.7 +1.1 +0.5 N.D. +0.7
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.0 +0.3 +0.3 N.D. +0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.6 +0.5 +0.3 N.D. +0.4
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