Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_12975 and PS417_12980 overlap by 4 nucleotidesPS417_12980 and PS417_12985 are separated by 131 nucleotidesPS417_12985 and PS417_12990 are separated by 64 nucleotidesPS417_12990 and PS417_12995 are separated by 28 nucleotides PS417_12975: PS417_12975 - GCN5 family acetyltransferase, at 2,835,270 to 2,835,710 _12975 PS417_12980: PS417_12980 - alkylhydroperoxidase, at 2,835,707 to 2,836,180 _12980 PS417_12985: PS417_12985 - DNA-binding protein, at 2,836,312 to 2,837,739 _12985 PS417_12990: PS417_12990 - nucleoside hydrolase, at 2,837,804 to 2,838,880 _12990 PS417_12995: PS417_12995 - MFS transporter permease, at 2,838,909 to 2,840,219 _12995
Group Condition PS417_12975 PS417_12980 PS417_12985 PS417_12990 PS417_12995
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 N.D. -1.1 +0.1 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.1 N.D. -0.8 -0.8 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.4 N.D. -0.7 -0.2 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 N.D. -1.0 +0.4 -0.6
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.0 N.D. -0.8 -0.6 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 N.D. +0.1 -1.0 -0.4
phage P. simiae Grant Run MOI 0.1 +0.2 N.D. -0.2 -0.9 -0.2
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 N.D. -0.4 -0.5 +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.2 N.D. -0.5 -0.3 +0.5
no phage control no phage control -0.2 N.D. -0.6 +0.5 -0.3
phage P. simiae ORA MOI 0.1 -0.6 N.D. -0.7 +0.5 +0.4
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -0.2 N.D. +0.6 -0.8 +0.1
agar plate interaction control Taped volatile agar plate with no fungus +0.6 N.D. -0.5 -0.3 -0.1
phage JP1 MOI 1 -0.8 N.D. -0.6 +1.1 +0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.1 N.D. -0.7 -0.0 +0.7
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.2 N.D. -0.9 +0.6 +0.2
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 N.D. -0.7 +1.1 +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.5 N.D. -0.5 +0.8 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.6 N.D. -0.2 +1.4 +0.1
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X -0.5 N.D. +0.4 +0.6 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 N.D. +0.6 +0.2 -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 N.D. -0.2 +0.9 -0.2
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 N.D. +0.1 +1.0 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 N.D. +0.7 +0.7 -0.0
soil soil sample 3; outgrowth in LB -0.0 N.D. -0.2 +1.0 +0.3
stress Gentamicin 0.008 mg/ml -0.2 N.D. +0.7 +0.6 +0.1
rhizosphere rhizosphere sample 8; outgrowth in LB -0.2 N.D. +0.6 +0.5 +0.2
seeds Growth on radish seeds for 72 hours +0.5 N.D. +0.3 +0.7 +0.2
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 N.D. +0.2 +0.4 +0.6
carbon source L-Valine (C) +0.6 N.D. -0.1 +0.8 +0.6
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