Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_12970	PS417_12975	PS417_12980	PS417_12985	PS417_12990
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.5	+0.1	N.D.	-0.8	-0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.5	-0.4	N.D.	-0.7	-0.2
liquid stress	Scopoletin 3 mM; liquid stress	-0.9	-0.3	N.D.	+0.1	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-0.6	N.D.	-1.1	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	-0.8	N.D.	-0.4	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-0.5	-0.2	N.D.	+0.6	-0.8
phage	P. simiae ORA MOI 0.1	+0.2	-0.6	N.D.	-0.7	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-0.1	N.D.	-1.0	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	-0.3	N.D.	-0.7	+1.1
phage	JP1 MOI 1	-0.0	-0.8	N.D.	-0.6	+1.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.2	+0.2	N.D.	-0.9	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.7	-0.3	N.D.	+0.1	-0.7
agar plate interaction control	Taped volatile agar plate with no fungus	+0.2	+0.6	N.D.	-0.5	-0.3
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	-0.6	-0.5	N.D.	+0.4	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.4	-0.6	N.D.	-0.2	+1.4
rhizosphere	rhizosphere sample 8; outgrowth in LB	-0.6	-0.2	N.D.	+0.6	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.8	+0.5	N.D.	+0.1	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.1	+0.5	N.D.	-0.5	+0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	-0.2	N.D.	+0.6	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.3	N.D.	-0.2	+0.9
seeds	Growth on radish seeds for 72 hours	-0.7	+0.5	N.D.	+0.3	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.5	+0.1	N.D.	-0.5	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	-0.4	N.D.	+0.7	+0.7
nophagecontrol	TIme6-nophage	+0.5	+0.6	N.D.	-0.4	+0.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	-0.3	N.D.	+0.1	+1.0
stress	Choline chloride 300 mM	+0.2	+0.5	N.D.	+0.7	-0.2
stress	Gentamicin 0.008 mg/ml	+0.3	-0.2	N.D.	+0.7	+0.6
soil	soil sample 5; outgrowth in LB	+0.6	+0.0	N.D.	+0.5	+0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.7	+0.1	N.D.	+0.6	+0.5
phage	P. simiae OR Antrim MOI 1	+0.5	+0.4	N.D.	+0.3	+0.8