Fitness for 5 genes in Pseudomonas simiae WCS417

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 552 experiments or choose conditions or try the comparative fitness browser

500 ntPS417_12945 and PS417_12950 overlap by 4 nucleotidesPS417_12950 and PS417_12955 are separated by 10 nucleotidesPS417_12955 and PS417_12960 are separated by 317 nucleotidesPS417_12960 and PS417_12965 are separated by 189 nucleotides PS417_12945: PS417_12945 - sulfonate ABC transporter ATP-binding protein, at 2,830,245 to 2,830,961 _12945 PS417_12950: PS417_12950 - ABC transporter permease, at 2,830,958 to 2,831,779 _12950 PS417_12955: PS417_12955 - sulfonate ABC transporter substrate-binding protein, at 2,831,790 to 2,832,746 _12955 PS417_12960: PS417_12960 - transporter, at 2,833,064 to 2,833,279 _12960 PS417_12965: PS417_12965 - aminotransferase, at 2,833,469 to 2,834,620 _12965
Group Condition PS417_12945 PS417_12950 PS417_12955 PS417_12960 PS417_12965
stress R2A with Polymyxin B sulfate 0.003 mg/ml -1.4 N.D. +0.2 N.D. -0.5
phage JP1 MOI 10 -0.0 N.D. -0.9 N.D. -0.4
solid stress Fraxetin 3 mM; solid stress -0.5 N.D. -0.4 N.D. -0.3
phage JP1 MOI 0.1 -0.6 N.D. +0.3 N.D. -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 N.D. -0.8 N.D. +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 N.D. -0.7 N.D. -0.2
phage Wcs_1 +0.6 N.D. -0.4 N.D. -0.7
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 N.D. -0.5 N.D. -0.3
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.8 N.D. +0.2 N.D. +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 N.D. -0.4 N.D. +0.3
phage JP1 MOI 1 -0.6 N.D. -0.2 N.D. +0.4
phage Wcs_0.1 -0.5 N.D. -0.3 N.D. +0.4
seeds Growth on radish seeds for 72 hours -1.1 N.D. +0.7 N.D. +0.1
phage P. simiae ORA MOI 0.1 -0.6 N.D. +0.5 N.D. -0.1
supernatant control Vogels_fungal_media 0.1X +0.4 N.D. -0.6 N.D. +0.2
phage P. simiae OR Antrim MOI 1 -0.6 N.D. +0.5 N.D. +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.6 N.D. +0.2 N.D. -0.5
phage P. simiae OR1 MOI 0.1 +0.3 N.D. +0.5 N.D. -0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.3 N.D. +0.7 N.D. +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 N.D. +0.5 N.D. -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 N.D. +0.8 N.D. -0.3
supernatant control Vogels_fungal_media; pH 5.5 +0.6 N.D. +0.3 N.D. -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.9 N.D. -0.2 N.D. +0.2
seeds Growth on radish seeds for 72 hours +0.2 N.D. +0.9 N.D. -0.2
carbon source L-Valine (C) +0.5 N.D. +0.8 N.D. -0.3
carbon source m-Inositol (C) +0.7 N.D. +0.2 N.D. +0.2
phage P. simiae ORA MOI 1 +0.4 N.D. +0.4 N.D. +0.4
phage P. simiae OR Antrim MOI 0.1 +0.5 N.D. +0.3 N.D. +0.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.1 N.D. +0.2 N.D. +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.1 N.D. +0.1 N.D. +0.2
remove
PS417_12945
plot		 remove
PS417_12950
plot		 remove
PS417_12955		 remove
PS417_12960
plot		 remove
PS417_12965
plot