Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_01285	PS417_01290	PS417_01295	PS417_01300	PS417_01305
soil	soil sample 5; outgrowth in LB	-4.2	+0.1	N.D.	-1.3	+0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	-2.9	N.D.	-0.7	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-2.6	N.D.	+0.4	-0.6
liquid stress	80% Methanol 2 mM; liquid stress	-1.8	+0.1	N.D.	-1.0	-0.1
phage	P. simiae Grant Run MOI 0.1	+0.2	-2.7	N.D.	-0.1	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-1.3	N.D.	-0.0	-1.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.6	-1.0	N.D.	-0.8	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-1.0	-1.4	N.D.	+0.2	-0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	-1.7	N.D.	+0.2	-0.5
carbon source	succinate (C)	+0.5	-1.5	N.D.	+0.1	-1.0
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.0	+0.6	N.D.	-2.9	+0.3
solid stress	Fraxetin 3 mM; solid stress	+0.5	-1.2	N.D.	-0.7	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.4	-3.7	N.D.	+0.7	+0.0
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.4	+1.1	N.D.	-0.7	-0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+1.4	-1.7	N.D.	-1.1	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.1	-1.7	N.D.	-0.3	-0.1
phage	JP1 MOI 1	+0.3	-1.6	N.D.	+0.8	-0.5
motility	inner cut, LB soft agar motility assay	+1.2	-2.2	N.D.	+0.2	-0.1
root	root sample 6; outgrowth in LB	+0.2	+0.5	N.D.	-1.8	+0.3
supernatant control	Vogels_fungal_media 0.1X	-0.7	+0.5	N.D.	-1.2	+0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.5	+1.1	N.D.	+0.1	+0.0
seeds	Growth on radish seeds for 24 hours	+0.7	-0.6	N.D.	-0.7	+0.8
seeds	Growth on radish seeds for 72 hours	-1.0	+0.8	N.D.	-0.5	+1.0
agar plate interaction control	Taped volatile agar plate with no fungus	-1.3	+1.1	N.D.	+0.3	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.7	-0.8	N.D.	+0.6	+0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.7	-0.7	N.D.	+0.3	+0.2
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.3	+1.6	N.D.	-0.6	+0.3
phage	P. simiae OR1 MOI 0.1	+0.4	+2.2	N.D.	-0.6	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	+2.2	N.D.	+1.1	-0.8
phage	Wcs_1	+0.9	+1.9	N.D.	+0.2	+0.6